Chr:
Chr1
Start:
36307506
End:
36311228
Strand:
-
Ref_name:
LOC112937595
Sequence
(XR_003240219.1):
UGGAGAACGAAGCCGGCGCCGUCGUCUCUUCCCCACGUCGCCAUUGCCGUGCAUCCUUCGUUGUUCUCCAUCCGAACCGACCUACUCUACCGCCUCUCGACACCUAUAAAUAGCCGGUGAAGCCCCCUCUCUUCUUCCACAACCGAGCCGUGAGCUCAGUCUCUCUCUCUCUCUCUUCUCAUGUCAAACCACCACCGGCCAUCGUCGAUCUCCCUCACUGGAGUGUUUCUGGCCAAGCCCUUGCGCCAUCGGGUUUGCCUCGACGAGGCGAACUCAUUUUCCUAGUUUACCCUUCCUUUUCCCUUCCGAAACCAACCAUCAUAGCCACCUCCUUUGUUGCCGGAGCAAGCUCUUGCCGUCGCCGUUCCGGUCUCCUCCCUAACCUUCUCUAUCGGCAACCACCCUCCCUAAGUGCGCGUUGCUCGGGAACGCGUUUUGCCGCCGGAGUCACAGUCUUCCAUCCACCGGAGAGCCGGCGCCCCUUCUCUCCCUCCUCUCAACUCACUCGGCAACAGAAAAGAAGAAGAGAACGGGAGGAAGAAGAAGGAAGAAGAAAGAGAGAAGAAAAAAAGAAAAGGGAACUGACAGUAGAGUCUAUUUUAUUUUGGAUGGCAACCUUUGGUAUUUCGAGAAUCGGAUAAUCAGGUUGCCUAUCUCGGAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCAUCUCCUUUGAGCAUAAAUGCCCUGUAUUCUAUAUCUCUGAUAUCUCAUGCAUUAGCCAUUCAUGAUUUUCAAUGCAUAACCUGAACAUAUAGCAAACCAGAUAUGCUAGCUUUUGCUUAGCCCUGCCUAGUUAGAUUAUGCAUAAAAUUUAAUGAACUUAGAUUGGGACAGUACGGUAGAAAUGGUUGAUUUCCGGGUGGCUAGUACUGUCUCAGUCGAUAUAAGUUUAUACCAAAUACUUAUGUCAAACGAACGAGUACGACCGCAGCUUCUAGAAUAGGGACAAACCUAGCUAUUAUGUUAAUUAGCAAUGUGGUACCUCUGUACAGUGGUUCUAUUUUAAAGUCCUCGUGUAGGAGGCAAAUUUACGCCGAGUAGGGCAAUUGUGAUAUUUACCGAGGCACAGGUAAAUAUGUAUUUGAGAUAUAUUGUGAUCACGUUUGUGAACCCUGAUUGCGAUGACAUGGUGUCAUACAAUCAGUCCUCUCUAAAGACCCCGGUAACGCCAGAACUCCUCUCGCUGCAGUUAACGUCACGUUCAGAGCGCAUGAGGAUAUAAGUUCAUGGAACAGGUACCACAAUUGUUAAUAACCUAAUACUGGGCCAUGACUAAGCUAAUGAAUAUUGGCAAGUCGUGGACUGCGGGUAAAGCGUACAUCUACUGCAGUAGGAUAUUCAUCAAACUAUUCGAAUAGCCGUGCUCACGGAAUUGAGUACCGAGAUUCAUAUGGUAUUUGGUUAGAAACCUAAUUCGAGAUUUUACUAAAUAUUGUUGCAUUAAAGUCAUUACAAGCUUUCUUCUUCUACAUUCUCUGCUUUCUGCAAGUAAAUCUAGCCCUACUCAAAUACUGCUAUUUCAUACAUUCAUAUUGAAUAUAAUAGCUUGCUGAGUACGUUGUACUCACCCUUGCUUCAACCUCACCUUUUUCAGAGUCCAUUUGGAGUUCUUAUCGAAGCCGGGAGUUCAAUCACAUAAGUUAGUUCACUUUAAACCUAGUCUUGAAGUCUAGUAUUGUUAGAUGGUUUAACUCUAUAGCAAAACAUUAGAGUUGAUUUAUUCUAUAGCUUCUGUUGUAUUAGAUAGCUACAAGUUUGUAAAUACCCAUGUAUUUUAUAAUAAUAUCUCCUUUGGAACCUUGUUCAAAUGUAUGCAAUGAAGAUUCAGAUUGUUGAACCUGUAUCAAUCUACUGAUCCAGGGCUUGAUACAGUCUAAACAUGUCGGUUACCGAAUCAUUAGUUUUGAGACCCGACAGUUCCCCUCCAGGCGAUGAGCUAGAUCUGCACCGUGGGUUGUCACCGUAGCCAAUCGGCAGCUGAAUCCGAGGUUGUCGCCUUCUCUGCAACUCAGUGCCUCAUCUCUCUCCUUGUCUUUGUUCGACGCCAAGGCUUCUUUGCUAAUCGCCUUGGAAGCAAAUAUGAGGAUUUGAGGGGAUACCACUGCCGCUAUCAUAUUGCCCCCACCUCUGGCUCCACCGCCCCCUCCUUCGUUAACCUUGCUGAUGCGAGAAAGGAAUUAUGGCCACCUACAUGCUUCCCCUGCGUGAGGAAGGCCCGUUCCAUGUGUGCCGUUGUCGGCACAUCCCGAUGCCCACCUUCACUAAGCUCGAGUUUCAUGUGGGCGAUAUCUUGGAGCUCGCCAGCGAUGGCCGUCUCGAGGUAGAACUCACUGGCUGAUCCACUAUUCUCUUUUUUUUUCAUGUGGCUAUAAUUGCCAUUUAAGAGCAAUAUUAGUAUGGGUGGACCAAGUCAACGUGUCAGGUUAGACAGAACUACUGUAAUGUCACGUAGGACGGAAUCACAGCCUAAACAACCGAGUGAGGUUAAUUGAUCUGGUUUUGUGGUUUUGUGGUUUUGACUUUUGAGGUAUGCGAAUCACAUUGGAGUUGAGGAGGCAA
Sequence
(XR_003240220.1):
CGAAGCCGGCGCCGUCGUCUCUUCCCCACGUCGCCAUUGCCGUGCAUCCUUCGUUGUUCUCCAUCCGAACCGACCUACUCUACCGCCUCUCGACACCUAUAAAUAGCCGGUGAAGCCCCCUCUCUUCUUCCACAACCGAGCCGUGAGCUCAGUCUCUCUCUCUCUCUCUUCUCAUGUCAAACCACCACCGGCCAUCGUCGAUCUCCCUCACUGGAGUGUUUCUGGCCAAGCCCUUGCGCCAUCGGGUUUGCCUCGACGAGGCGAACUCAUUUUCCUAGUUUACCCUUCCUUUUCCCUUCCGAAACCAACCAUCAUAGCCACCUCCUUUGUUGCCGGAGCAAGCUCUUGCCGUCGCCGUUCCGGUCUCCUCCCUAACCUUCUCUAUCGGCAACCACCCUCCCUAAGUGCGCGUUGCUCGGGAACGCGUUUUGCCGCCGGAGUCACAGUCUUCCAUCCACCGGAGAGCCGGCGCCCCUUCUCUCCCUCCUCUCAACUCACUCGGCAACAGAAAAGAAGAAGAGAACGGGAGGAAGAAGAAGGAAGAAGAAAGAGAGAAGAAAAAAAGAAAAGGGAACUGACAGAGUCCAUUUGGAGUUCUUAUCGAAGCCGGGAGUUCAAUCACAUAAGUUAGUUCACUUUAAACCUAGUCUUGAAGUCUAGUAUUGUUAGAUGGUUUAACUCUAUAGCAAAACAUUAGAGUUGAUUUAUUCUAUAGCUUCUGUUGUAUUAGAUAGCUACAAGUUUGUAAAUACCCAUGUAUUUUAUAAUAAUAUCUCCUUUGGAACCUUGUUCAAAUGUAUGCAAUGAAGAUUCAGAUUGUUGAACCUGUAUCAAUCUACUGAUCCAGGGCUUGAUACAGUCUAAACAUGUCGGUUACCGAAUCAUUAGUUUUGAGACCCGACAGUUCCCCUCCAGGCGAUGAGCUAGAUCUGCACCGUGGGUUGUCACCGUAGCCAAUCGGCAGCUGAAUCCGAGGUUGUCGCCUUCUCUGCAACUCAGUGCCUCAUCUCUCUCCUUGUCUUUGUUCGACGCCAAGGCUUCUUUGCUAAUCGCCUUGGAAGCAAAUAUGAGGAUUUGAGGGGAUACCACUGCCGCUAUCAUAUUGCCCCCACCUCUGGCUCCACCGCCCCCUCCUUCGUUAACCUUGCUGAUGCGAGAAAGGAAUUAUGGCCACCUACAUGCUUCCCCUGCGUGAGGAAGGCCCGUUCCAUGUGUGCCGUUGUCGGCACAUCCCGAUGCCCACCUUCACUAAGCUCGAGUUUCAUGUGGGCGAUAUCUUGGAGCUCGCCAGCGAUGGCCGUCUCGAGGUAGAACUCACUGGCUGAUCCACUAUUCUCUUUUUUUUUCAUGUGGCUAUAAUUGCCAUUUAAGAGCAAUAUUAGUAUGGGUGGACCAAGUCAACGUGUCAGGUUAGACAGAACUACUGUAAUGUCACGUAGGACGGAAUCACAGCCUAAACAACCGAGUGAGGUUAAUUGAUCUGGUUUUGUGGUUUUGUGGUUUUGACUUUUGAGGUAUGCGAAUCACAUUGGAGUUGAGGAGGCAA
Sequence
(XR_003240221.1):
UGGAGAACGAAGCCGGCGCCGUCGUCUCUUCCCCACGUCGCCAUUGCCGUGCAUCCUUCGUUGUUCUCCAUCCGAACCGACCUACUCUACCGCCUCUCGACACCUAUAAAUAGCCGGUGAAGCCCCCUCUCUUCUUCCACAACCGAGCCGUGAGCUCAGUCUCUCUCUCUCUCUCUUCUCAUGUCAAACCACCACCGGCCAUCGUCGAUCUCCCUCACUGGAGUGUUUCUGGCCAAGCCCUUGCGCCAUCGGGUUUGCCUCGACGAGGCGAACUCAUUUUCCUAGUUUACCCUUCCUUUUCCCUUCCGAAACCAACCAUCAUAGCCACCUCCUUUGUUGCCGGAGCAAGCUCUUGCCGUCGCCGUUCCGGUCUCCUCCCUAACCUUCUCUAUCGGCAACCACCCUCCCUAAGUGCGCGUUGCUCGGGAACGCGUUUUGCCGCCGGAGUCACAGUCUUCCAUCCACCGGAGAGCCGGCGCCCCUUCUCUCCCUCCUCUCAACUCACUCGGCAACAGAAAAGAAGAAGAGAACGGGAGGAAGAAGAAGGAAGAAGAAAGAGAGAAGAAAAAAAGAAAAGGGAACUGACAGAGUCUAUUUUAUUUUGGAUGGCAACCUUUGGUAUUUCGAGAAUCGGAUAAUCAGGUUGCCUAUCUCGGAUUUAUUUGCGUUGGAGCAAGGCAAGUUAUUAUUCAUCUCCUUUGAGCAUAAAUGCCCUGUAUUCUAUAUCUCUGAUAUCUCAUGCAUUAGCCAUUCAUGAUUUUCAAUGCAUAACCUGAACAUAUAGCAAACCAGAUAUGCUAGCUUUUGCUUAGCCCUGCCUAGUUAGAUUAUGCAUAAAAUUUAAUGAACUUAGAUUGGGACAGUACGGUAGAAAUGGUUGAUUUCCGGGUGGCUAGUACUGUCUCAGUCGAUAUAAGUUUAUACCAAAUACUUAUGUCAAACGAACGAGUACGACCGCAGCUUCUAGAAUAGGGACAAACCUAGCUAUUAUGUUAAUUAGCAAUGUGGUACCUCUGUACAGUGGUUCUAUUUUAAAGUCCUCGUGUAGGAGGCAAAUUUACGCCGAGUAGGGCAAUUGUGAUAUUUACCGAGGCACAGGUAAAUAUGUAUUUGAGAUAUAUUGUGAUCACGUUUGUGAACCCUGAUUGCGAUGACAUGGUGUCAUACAAUCAGUCCUCUCUAAAGACCCCGGUAACGCCAGAACUCCUCUCGCUGCAGUUAACGUCACGUUCAGAGCGCAUGAGGAUAUAAGUUCAUGGAACAGGUACCACAAUUGUUAAUAACCUAAUACUGGGCCAUGACUAAGCUAAUGAAUAUUGGCAAGUCGUGGACUGCGGGUAAAGCGUACAUCUACUGCAGUAGGAUAUUCAUCAAACUAUUCGAAUAGCCGUGCUCACGGAAUUGAGUACCGAGAUUCAUAUGGUAUUUGGUUAGAAACCUAAUUCGAGAUUUUACUAAAUAUUGUUGCAUUAAAGUCAUUACAAGCUUUCUUCUUCUACAUUCUCUGCUUUCUGCAAGUAAAUCUAGCCCUACUCAAAUACUGCUAUUUCAUACAUUCAUAUUGAAUAUAAUAGCUUGCUGAGUACGUUGUACUCACCCUUGCUUCAACCUCACCUUUUUCAGAGUCCAUUUGGAGUUCUUAUCGAAGCCGGGAGUUCAAUCACAUAAGUUAGUUCACUUUAAACCUAGUCUUGAAGUCUAGUAUUGUUAGAUGGUUUAACUCUAUAGCAAAACAUUAGAGUUGAUUUAUUCUAUAGCUUCUGUUGUAUUAGAUAGCUACAAGUUUGUAAAUACCCAUGUAUUUUAUAAUAAUAUCUCCUUUGGAACCUUGUUCAAAUGUAUGCAAUGAAGAUUCAGAUUGUUGAACCUGUAUCAAUCUACUGAUCCAGGGCUUGAUACAGUCUAAACAUGUCGGUUACCGAAUCAUUAGUUUUGAGACCCGACAGUUCCCCUCCAGGCGAUGAGCUAGAUCUGCACCGUGGGUUGUCACCGUAGCCAAUCGGCAGCUGAAUCCGAGGUUGUCGCCUUCUCUGCAACUCAGUGCCUCAUCUCUCUCCUUGUCUUUGUUCGACGCCAAGGCUUCUUUGCUAAUCGCCUUGGAAGCAAAUAUGAGGAUUUGAGGGGAUACCACUGCCGCUAUCAUAUUGCCCCCACCUCUGGCUCCACCGCCCCCUCCUUCGUUAACCUUGCUGAUGCGAGAAAGGAAUUAUGGCCACCUACAUGCUUCCCCUGCGUGAGGAAGGCCCGUUCCAUGUGUGCCGUUGUCGGCACAUCCCGAUGCCCACCUUCACUAAGCUCGAGUUUCAUGUGGGCGAUAUCUUGGAGCUCGCCAGCGAUGGCCGUCUCGAGGUAGAACUCACUGGCUGAUCCACUAUUCUCUUUUUUUUUCAUGUGGCUAUAAUUGCCAUUUAAGAGCAAUAUUAGUAUGGGUGGACCAAGUCAACGUGUCAGGUUAGACAGAACUACUGUAAUGUCACGUAGGACGGAAUCACAGCCUAAACAACCGAGUGAGGUUAAUUGAUCUGGUUUUGUGGUUUUGUGGUUUUGACUUUUGAGGUAUGCGAAUCACAUUGGAGUUGAGGAGGCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
38.41%
ME_num:
MEP:
53.46%
HE_num:
HEP:
7.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.90
Avg Expression:
8.17
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.3934272750721 | 0.0366224690653871 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.21776698725564 | 1.64169205289887e-07 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.1603465509565 | 7.1342166343261e-09 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 4.14991508709132 | 2.89425217964367e-11 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.67396480398938 | 5.51953928954809e-39 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.95415909754104 | 0.000452786468569793 |
| 7 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.29304598163732 | 1.36955336591415e-10 |
| 8 | 9311 // leaf // control--/--9311 // leaf // salt | 1.99356033900107 | 2.84075200359688e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.03288904341069 | 0.0172628771501653 |
| 10 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 2.06485247115976 | 0.0288380249586083 |
| 11 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 2.06477010359618 | 0.0293550466246962 |
| 12 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 2.06466522878409 | 0.0289330143417558 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.0223190696571 | 6.29700066493083e-06 |
| 14 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.52591504377384 | 0.0314562042403607 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.40158914604322 | 0.0357735926452454 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 3.11617066401231 | 5.20556671590214e-11 |
| 17 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.04919007993654 | 5.58051607989759e-24 |