RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937480

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

8856131

End:

8857263

Strand:

+

Ref_name:

LOC112937480

Sequence
(XR_003240119.1):

UACGUGGCACUUACGUGGCGGGUUGACUUCCACGUGACGUUUAUGUGGCACUAAAAUAAAAAUAAAUGUAAAUGGGAUCCACAUGUCAGUGAGUAAAACAAUAAAAUAAAUUAUUGGGCCCACAUGCCAGUUACCUUUCUCCUUCCUCUUUAUCCUCACAGUGAGCGAGAUGGCGGCGGCAGGACGGCGGGAGCUUAGCGGGAGCAACGGGGCGGCGAGACCGCCGGAGGCGGGAGCCCGGUGGAGCGGCAGGAUGCCGGUGACGCCGAGGACAUGUGCCGCCGACCAACGCCACACCCGCGAGAUCGUCCACCAGCGGGGAGGGAGAAGAAGAGGCGGCGGCGAGGUCGAUGAGGCCGUCUCGCCGCUGCCGGGCUCACAGAGCUGUCUCCAUCUCGCUCGCCGUGAGAAUAAAGAGGAAGGAGAAAGUGCCACAUAAGCGCCACAUCGAUGCCAUAUGGGAAGUCAACCCGCCACGUAAGUGCCACGUAGGACAAAACCGCCGAGGAAGGUGAUUUGCUCUGGUUUCAGAGAAGAAGGAGGCAUUAUACCCGGUUUUCCGGUUGAGGGAUGUUAUUCACGCAAGCGCAACAGAUGAGGGAGGUAAAAUGGACUUAUUCCAAUACCAAAUAAUUUUGGAGCAACGUUGGCAUCCAGGGACCAGGGCUGGGCCACACGCGCAGAACACCACGGACCAUCACCUGCCACAGGGCCCACAACGGCACAACCUCGUAGGGCCGUAGGGCUGGGCUGCAGCAUGGCCCGUCUUGCGGCCCAACGCCAUCGGGCCGCUGCGCACCGAUCCCCGAUCCAGACGGACCCAACGAUGUCAUUGUAAAUGGCAUUUUUACAUGAUCGCUGAUGUUCUCUCUUUAUGCUAUUGUGCUAUGGAAAUGGAAGGAAAUGGUAGUUCUUGUGGAGCUAUUGUUUAAGAAAGAUAGGAAAACGCUUCAGAUCGGUCGUCCGGGCGGAACCAAAACAUCGGACAAACUUGUAAGAUGCUGAUUCCAGAAAUGCUUAUAAUUAGCCGUCUGAUGAAAAUUUAACCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

415

LEP:

84.35%

ME_num:

69

MEP:

14.02%

HE_num:

7

HEP:

1.42%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.95

Avg Expression:

1.95

Tip: OSA-LNC112937480 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-2.626428328198140.03858687716261
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-4.105211144578050.00198177614595135
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day-4.722697676720720.0266179740321159