Chr:
Chr12
Start:
10859240
End:
10860200
Strand:
-
Ref_name:
LOC112937477
Sequence
(XR_003240117.1):
AAGAAUGAGACAACAUGGAAGUAUAAAGACCCAUGCUUUUGGUUGUCCCCAUUUCUCCUGCAAUCUUCUUCAACCAACAUGGUUCAGUAGAGCACAGGGGAAUAAGUGCAGCAGAAGAGCCUCAUGAGAGCUUCUCAAGUUGUAUGUUUGAUCCUUGUGGUUGCUGCCUUGUUUGUUGCACUUGCUUCUCUACAAGCAAGUGCAGAUGCCGCUGGGUUGCAUGAAGAGGCCGGGGCAUUCAAGAAGGGCAAGCUGCCAUGGUGGUGGGACACCGAUUAUAUACGGUCGAAACGUCGAAGGCCAAUACAUAACUGAACUUGAUACUUCAUUAGUCUUAGAAGUGGUCUCUACUGAUUCAUAUAAUCAUGUAUGUCAUCCGGUUAAUCAUUGUUGUAUUAGCUAAGUUAGGCUACAUCGUGAAAUCCCUUUUAGUACUUUGGUUUCACAUUAUUCUUGUUUUUAUUAUAUUGUAGAAACUUUUCUUAAGAACUAGGAAGGUGGCCCGCGCGAAUGCGCGGGCAUGUAAUAUAGGUUGCGUUUAAGAGUGGAAUAUCAACCGGAUGACAUUGUCAUGUUUUAAAAGUACCGUUUUCUAGACAUUUUCUUCAUUGGCAUUGGUUAGAUAAUUUCUCCGAGCCAUUUGUUAGCUUUAAACUAUAUAAUAUUUAAUUCCUCCCUAUAAACAAUUAUAUAUUAUCUCUUUAUUAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.53%
ME_num:
MEP:
26.63%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.91
Avg Expression:
4.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.92713847266285 | 0.0157724713302323 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.08861152630445 | 0.00567376977014196 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.25866214044581 | 0.0101867619823229 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.18614806498521 | 0.0171166243375987 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.25328794660904 | 0.0132237926855598 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.11538935539292 | 0.000540786446145649 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.44430030522012 | 0.0250759936108172 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.64904172943007 | 0.000205454210035706 |