Chr:
Chr12
Start:
6119919
End:
6121571
Strand:
-
Ref_name:
LOC112937470
Sequence
(XR_003240111.1):
UCCAAGUUUCAGACUAUACAUAUUAACCCACCUCAUCAGCGCGCGCGGCUGAUAGCUAGCCAGCCGGGUCAUCACAGGAUUCUUCGACGAUGGCGGCAGCGGUGACGGCGCUCCGGCGUGUGGUGCUUCUCCUCCUCCUCACGUUGUUCGUCAUGGCGGCGUUGCAUGAGGCGCCCACGAUGGCUUCCGCCACGAGGGUUUUGCUACAACUACGGUUUAACGGACCUCCACCUCCAGAGGUUCCGCCCUGCGAUGGUUGCCCAUAGAGGGUGCAAAUUGGCCGACCCAGGAAACCAUUUAUAUAUGGGUCAAUUAAUUAGGUACAUAUUGAGACCGACAUGCAUGGGCGGGAAGUAGCACCCUUAUAUACACAUUUAUCUGCACACUAUCAAACUAUAUUGCUUAGGUCCAUAAUGAUACUUAAAUUAUAUCAUGGUUCGGUCUUGUAAUAAUCUUUUAGAUUUCUAAUAGUUUCUUCCCCAUGGAUUAUAAGGAUGGAUCGUAUUGUGGGAAUGAUACUGUUAUUAGUUUAACUUAUAAUUGCCUGUCGUGGAUGUCCGUAUUUACAGGGGAGACUCUGCCGAAAUUUCUAAUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.4%
ME_num:
MEP:
10.57%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.89
Avg Expression:
3.56
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.14599773355496 | 6.88328153958207e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 6.49390439761769 | 4.89309441450243e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.16337557859638 | 0.00144415349192604 |
| 4 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.20293967904545 | 0.0211396330809675 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.14411832321618 | 0.0114119830268529 |