RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937453

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

6498829

End:

6500309

Strand:

+

Ref_name:

LOC112937453

Sequence
(XR_003240089.1):

UCGGCGACCCCACCUGUCAGGCCCUCCUCCUACCUUCGGUCUCCAGAGCAGAAGCCGCCGGCAUCCGCCAUUGCCGCCCACGUCGCCGUCGAUUCCGGUCCUCCCGCUCACGCCCUCGCGCCCAAACCGCAUAAAAUCGGUUCCCCUCCACCUCCUCUACCAAAUUCCCCACUUUUCCCCAAUUUUCGGCGCCAAAUCGAGUCCCCACUCCGCGCAUGUUGACCUCCACGUCGCCGACCGGUUGCCGCCCGAUUCCGCCCCUCUCGGCCACGAUCUCGCCACUCAAGCCCAUAUAAACACUCCCCGUAGCUUCCUCUCUCGUUUCCCCAAUUUUCCCGAUCUCCUCGCGCCCCGUACCGCUCUCCCCACGUGCGCUCUAGCUCCGCCGCUCGCCGGCGGCCUCCAGCCGGCCCCUGCCGCCACUCCCGCCAUCCCCGCGUUGCGCCGUCACCACCACCGGCUUCGCCGCUCCCCGCCGCACCCCGGCUCCACCUCUUUUCCCCGAACCACUGCCGUGAUACCAUGUCCACGCGCAGCUCGAGCGACCGCCGCCUGUACCGCCUCCAGCCGCCUUCCGCCGCCGCUCCCGUCCACGCCGACCCACGCCGUCGUCUCCCUCGGCUCCGCAAGGACAAGGAGAACCUCGACCAUCUCUUCCCAUCACCGGAAAUUCACUGGACGUCCGUUUUCCCGUGCGCCACCGCUGCUCGUCCACUCCUUCCCGAGCGCCACCCGUCGCCGGAGUGCCGCCGUCUCUCUCCGCCCCGAGCUUCGUCGGCCGCCUCCCUCCAUUGUCGUACCCAUGAUUUCGGCCGUUUCGUCGAUUCGCGGUUUCUCGAAGACGUUGCUGUGGUCUCAUCAGUGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

365

LEP:

74.19%

ME_num:

126

MEP:

25.61%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.86

Avg Expression:

1.76

Tip: OSA-LNC112937453 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.034945735886970.0257102454791507
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-5.899527718088410.00810945069282067
3Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-2.382754906086770.00154608690504881