Chr:
Chr12
Start:
25478947
End:
25483596
Strand:
+
Ref_name:
LOC112937449
Sequence
(XR_003240070.1):
UUAGUUCAAUUUAUACAUAAUAGAAGUAUUUGAUGUUGGAGAUAAGAUUGAUUCAAUCUAGUUUUAACCUUCAGUUUUAUAUUAAAAUGAUUUCAUAAGAUAUAAUGUUUUUGAAAAUAUUAUGACAAUAAUUUCCAAGACAUAUCUAGAUAUACUAUUUCUUUACAAAACAUUUGAGAAACUACCGACUAUUCAAGUCUGGAAUGUUUGACUCAAAUCGAGAGAAUCCUAUAAUCCUCAAAUUAUUUAAGAGGGGGCACUGUACUUCCUUUCAUUAGUGAAUAGACCAAACAUUGGAACAACCUAGAGCUAACCAACAAACAUUGUACGGGAAAAUCAUAUAGUAAUGUAUUAAAAUAAAUUAUUCACCUGAUUAUUAUUAUAAAUUAUUUACUUAAUAAUUACUACCUCCGUCUCAUAAUAGAUGUCGCUUUGAUUUUUUUACUUGCAACGUUUGAUCAUUCGUUUUAUUUGAAAAAUUAGUGCAAAUAUAAAAAAUGAUAAGUCAUAUUUAAAGUACUUUUAAUAAUAAAACAAGUCACAAACAAAAUAAAUAAUAAUUCUAAAAUUUUUUGAAUAAGAUGAAUGAUCGAACAUUACAAACAAAAAACUCAAAGCGAUAAGUAAUAUGGGACGGAGGUAGUAUAAGAGUAACUUAAAUAUUUAAGAAGUAAACUUAAUCAGUAGCAAAUUAAUCGACCUGCUAUUAAUUAAUGUUGGUAUUUAUGUUAAUUUCCAGAGUAGGAUCUACGGCUCAAAUUAAAGCCAUAAAUCAAGUACUUUACAAAUCUAAAUUGAAAUUAGCUCAAAUAAUUGCAGUUACAAGCUUUUGUACAAUUCACCUAUGUUCUCAAUAAAACAAGUCAGAAUUAAUUAACAAGGGCUAAAACAAUCGAACUAAAUUAUAAAGAAGAAACAUAUCAUUUUUAAAGAAACACAGUUUUAAAGACAUUGAGUAAGUAAAUUAACCUACUCAUACAGAUAGGGUGUAUGUGUGUAUGUUCAAAGGGGUGGUUGUACGCGAGUUGUGGACGCAUACGUCUAUACAGUGGUGGAUCCACUGUUGGGGCUUGUCAGUGCGCAAGUCCCAGCUCCAUGAUCCCCUUCCUCUAAUUAGCAACUAAUGACUCUAUUAGCAUUUAGUGUAAAUCCAGUAGUAUGACAAGGAAAGCUAGCUCAAGCACUCAAUGUCCAAAUUAAAUUGCAAUGUCAAAUAUGUUAUAAGUAUACCAUAUCAAUUUCUUGAUACAUUUGUGUGUAUAUAUUAAUAUAGCUGCAAAUUAAAAUGGAGAAAGCAAUGGGUUGUCUUUUGAUCAUAUGGGUUUGGGUUUCAUCGAAAAUACUUAGUUGAUAUAUCCUAGUUUGUUUCAGUCACAUUGCCCAUAUUUAUACAAAGCCCUCCCUCAAUUUAUAUCUAGAUUCGCCACUGUGUCUAUACUGUGUUUUUCUUAAAAAAAAGACGUGGAGUAAAUAAUCAUACUUAAAAACAAGGCGAGAUGAGAUGACAAAAGAUGAGAGAGAGAGUAAAAAUCACCACUUUGGCUUGUAUAUAUCCCGGCCGCCGCUUGCUGCUUUCUUCUAGUCUUCUCCAAUUAUUCGCCCAUCUCUCUCUCUCUUCUUCCUCCUCUCCUCCAUGAAAGCUAGGGAAAUUAACUAAGGGCAGUGGUGCACCACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUUGGGAGCACAGCAAAAAAAAACCCUAACUUUGUAGCCGGAUUUGCAUGGAUUAAUCUGCUAGGUAGCUCAUCAGAUUCUUUGAGAGUUUGCCUUGCUCUUCUGCAGAUGAAGACGUAAUCUUUGAACAGAUGGGAUUCUCAACUCUCAAGGUGAGGUAGUCAUCAAUCCAAUCCAUAUACCUGCUCAAAUUCAGUUUUAAUUAAAGACUAGCUGCUUCUAUGGAGUUAAUUAGGGAUCCUUUUUUAUAGAUCUCUCUUGAUCUGUUUCUUAGUCUGUUCUUUCUUAAUAAGGCAUAUAUACCUCUUGGAUUUGGAUUUUCUUGAAAAUUAAGGUAGUUUAUGAGUUGGAUGUGUUGUGUUAUCUGCCCAGCCUUAAUUUAACUGUGCUUCCUAAAAAUUCGUUUGAUUUGAUGGUAGCAUCUGAAUUGUGAACUCAUCUUUGGAGCUUGGACUUUAGACCAGGUGCCUUAAUUCCUUAACAUAAGAUUUGGUCCAUAUUGUUUAUGGAGCUUCUUAUCAAGAAAUACUCUUUUGAUUAGGGAGUCCCCUUGUCACUUUCUUCAGUUGUGCAGGUACAUAUGACAUAUCUGUAUUAAACUGAUGACAUUCAUAACCAACUGUCCAAGUAGGGAUUCAUAUCUUUCUACUAAUUGCAGAAUGUUUUCUUGGCUGAAGGAAGUUUAAUCUAACUGUUCAAGUUAGUUGCUUGGUUAGCUGAUAGUGAUCCCUGUGUUUUCUAGUUGUUGAUACUGCAUAUACAUAUAUCUGUGACAUAUGGCUAGUUCUUGUUUGUUGUGUGUAGAUAAGAUACAUACAAGAUUCUGAUCUCUGCAGCAAAAGAAACAAAGCUUCCUUUUUUCUCUUGUUUUAUCCCCUAAUAUAUCUCUUCUUUUGCAGUUCUAGCUAGCAAUUUCACUGUAAAACAUGUGUAUUACCGAUCAAUACUGGCAUAUAUCUGAACUUGAUGCAAUACAUGUGUAUUACUGAUCAAUACAUAAAACUGAAAAUGUGGAACAUAUCUGCUAAUUAUUUUCAUGAGUGUGGCUUUGAUUAUUGUGAUCUUGCCACUUGCCAGCAAUGAUGUUAGCUAGUGAUGGGAAUAUCACCUGACCAAAGGAGGGACAUGAUUAACCUUGCUAAUUAAGUAACAAGAAAAGGAGGAGGGGGCAAAAGAAUUAUGGAAUGGGUUUUCUUGACCUGAAGACAAGUAGUAAGAUUUGCUAAUGCUUGCUUGCAAGAUAUGCAUGCCUAACCACAAAACAAGGAGUUUGGCACUACAAAACUGAAUGAUGAUUGCCUCUUGCUUGAAGGAUGAAACUGCUGCCCAUCUUUUGAUCAUGGCACCCCCUUCGCAUAUGCAUGAUUGCCCACACUUUUCUCCUCUUUUGGGCUCUGUACUAUGGAGAUAUUCAAGCCAUUUUCUUGAGAUUUUCUCUGCAAUGUAAUGACCUGUUCUGUCCCUUGAUGUUUCACUUGCAAAGGAGACUGUACUACAGCAUCUCUCUCUCUAGUCUCUACCUCUCUUGAUGUUUCACUUGCAAAGGAGAUUGUACUACACCACCAUCUCUCUCUACCAAUCUCUCUCUCUCUCUCUCUAAUUAGUUGCAAGUUUUGUUGGCAUCUCUAACCACCUCUCCACACUCAUGGUCAUGGCCAUGGCUAGCACAUUUGUCACCUAGCUUGCAUUGCAUGGUCCUUUGGAAGAUUCAUGGGCCACACACACAUGGUGACAUUCAUGCAAAGCUCCAAGCAGGUCUCCUUUAUUGUGAUUUGGUCAGCUAGCUGGUUUGUUACAAGAUGCCCACAACCUUUGUCCUUUCAAUUCAAUGCAGUGUGCAGUGUGUGCCUGCAACUUUCAUAUACAUGUUGUACCAUCAUGUGUCCUCUUCCUGGCUUGCAAAAAUGUAAUGGCUAAUCACAUCCAUCAUGCUUGCAAAUUAAGCUAAUUAAUUAAUCACAGGUGGCUAGCUAAUUACCAACUGAUGAUGAUGAUUAGUGACAGGCAAAGAUGAUAAUCUAGAUAUCUUGUUCUUCUCACUACUGUCUUGUCAUUGUUGGCGUGGAGUGCAAUGCUGCCGUUUGUGUGGCUCCAGAAAGUCAUAUUCAGAUGGUUUGCAAGGAUUAGAAGUCAUGGGUGUACUGUGUGCAAAUUGAACUUGUCAGGAACAGUGACUGAAUUUUAUUGUUCAGGCUUUGCUUGUCUGAACUCAAGAAGAGGUAGAGCUAGGGUGUUAUUUUUUUUAUCUGAUUUAUGUGAUACAUAAUCAACUACCAUUCGUUUGACAGAACAAGAUUGAUAGGUGCAUGUUCAGAGAAGUUCCUUCAGGUUAAUUUCUUAUCAGCUUAAGAUUUUCCUCCUUUUUUCUCUCUAGUAGCUAAAGUACACUUGCAUGUACAAUAUAUUCAACCGGAACUUACACAGAAGAGCUAAUUUAACUUAUAGUAUAUGCAAAUUGUUCUUGUUUUUCUCAUACCUGCAUCAGAUAUUCAGAUUAGUGAUACGAGUAAUGGGCCUGUUCGGCUGCUUUGUACCGCCGCUGCCCUGCCACAGCUGGAGAAACAAUAUACCAUGCUUGUUGGCUGCACCCGAAUAGAGCCAAUACACUCAGAAUAAGUUCACUUUAGGUCCCUCAAUUUGUCACCCAGUCUGAUUUGCAUUCUCAGUCCAGAAAAACGGAUACAACGCAUCCCUCAACUUACAAAA
Sequence
(XR_003240071.1):
UUAGUUCAAUUUAUACAUAAUAGAAGUAUUUGAUGUUGGAGAUAAGAUUGAUUCAAUCUAGUUUUAACCUUCAGUUUUAUAUUAAAAUGAUUUCAUAAGAUAUAAUGUUUUUGAAAAUAUUAUGACAAUAAUUUCCAAGACAUAUCUAGAUAUACUAUUUCUUUACAAAACAUUUGAGAAACUACCGACUAUUCAAGUCUGGAAUGUUUGACUCAAAUCGAGAGAAUCCUAUAAUCCUCAAAUUAUUUAAGAGGGGGCACUGUACUUCCUUUCAUUAGUGAAUAGACCAAACAUUGGAACAACCUAGAGCUAACCAACAAACAUUGUACGGGAAAAUCAUAUAGUAAUGUAUUAAAAUAAAUUAUUCACCUGAUUAUUAUUAUAAAUUAUUUACUUAAUAAUUACUACCUCCGUCUCAUAAUAGAUGUCGCUUUGAUUUUUUUACUUGCAACGUUUGAUCAUUCGUUUUAUUUGAAAAAUUAGUGCAAAUAUAAAAAAUGAUAAGUCAUAUUUAAAGUACUUUUAAUAAUAAAACAAGUCACAAACAAAAUAAAUAAUAAUUCUAAAAUUUUUUGAAUAAGAUGAAUGAUCGAACAUUACAAACAAAAAACUCAAAGCGAUAAGUAAUAUGGGACGGAGGUAGUAUAAGAGUAACUUAAAUAUUUAAGAAGUAAACUUAAUCAGUAGCAAAUUAAUCGACCUGCUAUUAAUUAAUGUUGGUAUUUAUGUUAAUUUCCAGAGUAGGAUCUACGGCUCAAAUUAAAGCCAUAAAUCAAGUACUUUACAAAUCUAAAUUGAAAUUAGCUCAAAUAAUUGCAGUUACAAGCUUUUGUACAAUUCACCUAUGUUCUCAAUAAAACAAGUCAGAAUUAAUUAACAAGGGCUAAAACAAUCGAACUAAAUUAUAAAGAAGAAACAUAUCAUUUUUAAAGAAACACAGUUUUAAAGACAUUGAGUAAGUAAAUUAACCUACUCAUACAGAUAGGGUGUAUGUGUGUAUGUUCAAAGGGGUGGUUGUACGCGAGUUGUGGACGCAUACGUCUAUACAGUGGUGGAUCCACUGUUGGGGCUUGUCAGUGCGCAAGUCCCAGCUCCAUGAUCCCCUUCCUCUAAUUAGCAACUAAUGACUCUAUUAGCAUUUAGUGUAAAUCCAGUAGUAUGACAAGGAAAGCUAGCUCAAGCACUCAAUGUCCAAAUUAAAUUGCAAUGUCAAAUAUGUUAUAAGUAUACCAUAUCAAUUUCUUGAUACAUUUGUGUGUAUAUAUUAAUAUAGCUGCAAAUUAAAAUGGAGAAAGCAAUGGGUUGUCUUUUGAUCAUAUGGGUUUGGGUUUCAUCGAAAAUACUUAGUUGAUAUAUCCUAGUUUGUUUCAGUCACAUUGCCCAUAUUUAUACAAAGCCCUCCCUCAAUUUAUAUCUAGAUUCGCCACUGUGUCUAUACUGUGUUUUUCUUAAAAAAAAGACGUGGAGUAAAUAAUCAUACUUAAAAACAAGGCGAGAUGAGAUGACAAAAGAUGAGAGAGAGAGUAAAAAUCACCACUUUGGCUUGUAUAUAUCCCGGCCGCCGCUUGCUGCUUUCUUCUAGUCUUCUCCAAUUAUUCGCCCAUCUCUCUCUCUCUUCUUCCUCCUCUCCUCCAUGAAAGCUAGGGAAAUUAACUAAGGGCAGUGGUGCACCACAAGUUGGUGAAGCUGCCAGCAUGAUCUGAUGAUGAUGAUGAUCCACCUCUCUCAUCUGUGUUCUUGAUUAAUUACGGAUCAAUCGAUCAGGUCAUGCUGUAGUUUCAUCUGCUGGUUGGGAGCACAGCAAAAAAAAACCCUAACUUUGUAGCCGGAUUUGCAUGGAUUAAUCUGCUAGGUAGCUCAUCAGAUUCUUUGAGAGUUUGCCUUGCUCUUCUGCAGAUGAAGACGUAAUCUUUGAACAGAUGGGAUUCUCAACUCUCAAGGUGAGGUAGUCAUCAAUCCAAUCCAUAUACCUGCUCAAAUUCAGUUUUAAUUAAAGACUAGCUGCUUCUAUGGAGUUAAUUAGGGAUCCUUUUUUAUAGAUCUCUCUUGAUCUGUUUCUUAGUCUGUUCUUUCUUAAUAAGGCAUAUAUACCUCUUGGAUUUGGAUUUUCUUGAAAAUUAAGGUAGUUUAUGAGUUGGAUGUGUUGUGUUAUCUGCCCAGCCUUAAUUUAACUGUGCUUCCUAAAAAUUCGUUUGAUUUGAUGGUAGCAUCUGAAUUGUGAACUCAUCUUUGGAGCUUGGACUUUAGACCAGGUGCCUUAAUUCCUUAACAUAAGAUUUGGUCCAUAUUGUUUAUGGAGCUUCUUAUCAAGAAAUACUCUUUUGAUUAGGGAGUCCCCUUGUCACUUUCUUCAGUUGUGCAGGUACAUAUGACAUAUCUGUAUUAAACUGAUGACAUUCAUAACCAACUGUCCAAGUAGGGAUUCAUAUCUUUCUACUAAUUGCAGAAUGUUUUCUUGGCUGAAGGAAGUUUAAUCUAACUGUUCAAGUUAGUUGCUUGGUUAGCUGAUAGUGAUCCCUGUGUUUUCUAGUUGUUGAUACUGCAUAUACAUAUAUCUGUGACAUAUGGCUAGUUCUUGUUUGUUGUGUGUAGAUAAGAUACAUACAAGAUUCUGAUCUCUGCAGCAAAAGAAACAAAGCUUCCUUUUUUCUCUUGUUUUAUCCCCUAAUAUAUCUCUUCUUUUGCAGUUCUAGCUAGCAAUUUCACUGUAAAACAUGUGUAUUACCGAUCAAUACUGGCAUAUAUCUGAACUUGAUGCAAUACAUGUGUAUUACUGAUCAAUACAUAAAACUGAAAAUGUGGAACAUAUCUGCUAAUUAUUUUCAUGAGUGUGGCUUUGAUUAUUGUGAUCUUGCCACUUGCCAGCAAUGAUGUUAGCUAGUGAUGGGAAUAUCACCUGACCAAAGGAGGGACAUGAUUAACCUUGCUAAUUAAGUAACAAGAAAAGGAGGAGGGGGCAAAAGAAUUAUGGAAUGGGUUUUCUUGACCUGAAGACAAGUAGUAAGAUUUGCUAAUGCUUGCUUGCAAGAUAUGCAUGCCUAACCACAAAACAAGGAGUUUGGCACUACAAAACUGAAUGAUGAUUGCCUCUUGCUUGAAGGAUGAAACUGCUGCCCAUCUUUUGAUCAUGGCACCCCCUUCGCAUAUGCAUGAUUGCCCACACUUUUCUCCUCUUUUGGGCUCUGUACUAUGGAGAUAUUCAAGCCAUUUUCUUGAGAUUUUCUCUGCAAUGUAAUGACCUGUUCUGUCCCUUGAUGUUUCACUUGCAAAGGAGACUGUACUACAGCAUCUCUCUCUCUAGUCUCUACCUCUCUUGAUGUUUCACUUGCAAAGGAGAUUGUACUACACCACCAUCUCUCUCUACCAAUCUCUCUCUCUCUCUCUCUAAUUAGUUGCAAGUUUUGUUGGCAUCUCUAACCACCUCUCCACACUCAUGGUCAUGGCCAUGGCUAGCACAUUUGUCACCUAGCUUGCAUUGCAUGGUCCUUUGGAAGAUUCAUGGGCCACACACACAUGGUGACAUUCAUGCAAAGCUCCAAGCAGGUCUCCUUUAUUGUGAUUUGGUCAGCUAGCUGGUUUGUUACAAGAUGCCCACAACCUUUGUCCUUUCAAUUCAAUGCAGUGUGCAGUGUGUGCCUGCAACUUUCAUAUACAUGUUGUACCAUCAUGUGUCCUCUUCCUGGCUUGCAAAAAUGUAAUGGCUAAUCACAUCCAUCAUGCUUGCAAAUUAAGCUAAUUAAUUAAUCACAGGUGGCUAGCUAAUUACCAACUGAUGAUGAUGAUUAGUGACAGGCAAAGAUGAUAAUCUAGAUAUCUUGUUCUUCUCACUACUGUCUUGUCAUUGUUGGCGUGGAGUGCAAUGCUGCCGUUUGUGUGGCUCCAGAAAGAUGGUUUGCAAGGAUUAGAAGUCAUGGGUGUACUGUGUGCAAAUUGAACUUGUCAGGAACAGUGACUGAAUUUUAUUGUUCAGGCUUUGCUUGUCUGAACUCAAGAAGAGGUAGAGCUAGGGUGUUAUUUUUUUUAUCUGAUUUAUGUGAUACAUAAUCAACUACCAUUCGUUUGACAGAACAAGAUUGAUAGGUGCAUGUUCAGAGAAGUUCCUUCAGGUUAAUUUCUUAUCAGCUUAAGAUUUUCCUCCUUUUUUCUCUCUAGUAGCUAAAGUACACUUGCAUGUACAAUAUAUUCAACCGGAACUUACACAGAAGAGCUAAUUUAACUUAUAGUAUAUGCAAAUUGUUCUUGUUUUUCUCAUACCUGCAUCAGAUAUUCAGAUUAGUGAUACGAGUAAUGGGCCUGUUCGGCUGCUUUGUACCGCCGCUGCCCUGCCACAGCUGGAGAAACAAUAUACCAUGCUUGUUGGCUGCACCCGAAUAGAGCCAAUACACUCAGAAUAAGUUCACUUUAGGUCCCUCAAUUUGUCACCCAGUCUGAUUUGCAUUCUCAGUCCAGAAAAACGGAUACAACGCAUCCCUCAACUUACAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.54%
ME_num:
MEP:
70.53%
HE_num:
HEP:
20.73%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.65
Avg Expression:
7.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.42656492269477 | 2.53780748355937e-46 |
| 2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.09485647018522 | 0.00528537300722207 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.59567732113856 | 0.00101922360052212 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.93988545980613 | 0.00360121835727467 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.37742121972223 | 1.08554645704543e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.29470887957419 | 1.88904065617938e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.43487322960626 | 4.19893382552536e-09 |
| 8 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.16939796303563 | 9.7149379104541e-14 |