Chr:
Chr12
Start:
6624096
End:
6625932
Strand:
+
Ref_name:
LOC112937442
Sequence
(XR_003240030.1):
CAACCAUCCCUAAAAAUAUGGUAUUUCUUAUUCCCAAGAUAAAGGAAAAUUUAGAAUAUAUGUACUAUAUUGGCACGCAUACUAAAAAGAAAUUUAAAAGGUGCAUUCAUUUAAUUUGAUGCGUUGAAGGGUCGUCGUCAGACACUAGCUCUCAUUGGAGAUUAAUGUACUCGCUUUUUUAUAUAGUUAAGGCGUGUACGUAUUUUAAUAUUUAAAUCUGAAUUUUGAUCAAUGAUUAGUCUAAUAUUAAUAAAUAAUAUCACUGAAUUGACUCAAAUUUACUUUUCUAUUGUUGUAGUUUUGUUCAUACAAAUAUCGUAUUAUUUAAGAAACUAAGAAGUCCAAUAUUAGUUUUGAAGAUAAUGUUAAAUAUGACUACGCAUUAUAUUAGGUGCACAAUGGAUAGAGGAUAGCGUGCAUGCACACCAUUCAAUCGUUCAUUUGUUCUGGCGUGUAUACCUUGGGCUUUCCAUGAACCUCACAUUCCAUCAAUCUUCGACCCAGCCUGCUAGUCACACAAAAAGAGACAACUAGCCGUAGAAAAUUCUACCGGUUGGGUUUUGGCUGUACAUGUUUAUCACAUCAAAGGAAUCAAGCGGAUGUUUCUUCGUCACCUUAUAAUUAGGGUCAUAAUCUUUCUAGAACCAAGAAAAGUCACGCUAUGGUGGUGUGGAUCGAGACCAGUAAACCGGGCAGCAGCUGGUCCGGCAUUAUAUAUGUAUACCGGAGGGUCUAUAUAUAAGUAGCAAACUAAUGACCAGAGAGAGUAGUGCUAGCCAGUAAUAAGCACCUCUAGCCAAGAAAUCAGACUGGACGACCGGCCGGCGCCACGCCGGAGUUCGUUCACAAGUUCUCGCCGGUGAGCCUGCGUUCGAUGUUGAAAAGACGAGGAGUGGCUGCGCAGCAGCGGGCGCCGGAAGCGAUGGUUCUGGCGGCGGUGCUCCUCCUGAUGAUCGCCUACGGCGUGGCCCGGAACGAGGCGGCGGUGCCCGACUCCAGUCUCUCCUGCCUCUCCAUGCCUCGCCAACAAGACGGCGCGACAACUCCAAAUCGGCGUUCCUUAUCCGUGCACCCGUCGUGCUGCACUAGUAGCCCCCCGCCGAGCUGCUAUAAACCUCAACCCUGCCCACCGUCCUAAUCGACCGAAAAGGCCAAAAUAUAUACAUACACAAAAGUUACCAUAUAUAUUUCAAGAUCGGUGGAAGUACUUACAAUAUAUAUUAACGUGUUGUGUCAUACUAUGUCAGAAUUUACAAGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.16%
ME_num:
MEP:
14.43%
HE_num:
HEP:
25.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
36.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | 1.01950512043276 | 0.00191955642680334 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -3.09958267020996 | 2.89629803239922e-11 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -1.10397047877017 | 0.0116339087980127 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.25670123832566 | 2.07630331348923e-07 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.90641486080804 | 4.72421045637232e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.06492878463407 | 1.76540641767423e-06 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -7.76648922451314 | 1.70162318417596e-05 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -7.84271320016852 | 2.49320477348666e-05 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -1.38593895037025 | 0.0258196154494973 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.77655722315229 | 0.00907872297607539 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.02358589838991 | 2.87687236082484e-08 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.87103380082668 | 0.000207873181397962 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.31246595939439 | 0.000135682035085108 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.95322666961064 | 2.130915896929e-11 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.0257185927524 | 0.0110659654789233 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.95332660171995 | 2.02240981215589e-11 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.95347340440336 | 2.16721256961345e-11 |
| 18 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.20184458433896 | 0.0275531707861467 |