Chr:
Chr12
Start:
1409615
End:
1410137
Strand:
+
Ref_name:
LOC112937429
Sequence
(XR_003240002.1):
CGUCCGCACAAGCUGCAACUGCAACCCCAGCAUCCACCCUCAUCCGGACCUACCCAAUCUCCUAGACGACAUCACCGUUUCAGCUUCCCCGGCGAGCAUCCACCAUUCCACCACCUGCUGUACUCCUCAGCUUCGUCCUUGUGAGAAUAAGCUGUUCGAUAAAAUGUCUACUAAGCUCGGCCUUAUACUUUACUCCACACUUCCACAGUGAGUGGCAUCGCUACUUUUCAAAAGCUCUUGGAAGGAAAGAAAACAGGCUCCUAGGUCUGGUUGCACACAUAAUAGUAUGUAUGAUUCACGCAUGCUGUUUCUGUAGAUAGCUGUCAUUGGAUUAAGUCAAACUGUUUUGUGAUCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.1%
ME_num:
MEP:
42.28%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.80
Avg Expression:
3.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.31091207806182 | 0.0314218448447512 |
2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.53399322807215 | 0.00010847214346824 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.67934876687932 | 0.0444995956323399 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.22732441259748 | 0.00587452446167816 |