Chr:
Chr12
Start:
23035554
End:
23036921
Strand:
+
Ref_name:
LOC112937428
Sequence
(XR_003240001.1):
GUGAGGAAGAGAUGGCGAGAGGAAGGAGGAAGGCGAUAUGAGGGGGCAUCGUGGCCGUCCGAUCUUUGAUCCGACGGUGGAGGAUUCUCGGGGUUUUCUGUGAUGGGGUUCGAGCGAUGCCAAAUUGGCAGCCAAGAGGCAUUGUUUGUUUCAGAAAUGGAUAUCCGUAGAAUUACUUGCGUGUUGAAGAAUGUCAAAUUUUGAAUUGAUAUUUUCAUAGUCAAGUGUAUGUCGAUAAAGCUCUAUCUCUUUUGGAGUUGGAGCUCAACCAAACAGUUUCAGAUUCACUUUAUCGAGAUGUUUAUUACAAACGUCGAAUGUAUUAAGUUCAUCGGUAAUGUACGUGUUUUUUUUAAUUGAUGACGUCAUUGAUUUUAGAGAUAUGUUUAAUCUUUGUCUUAAUAAAUAAUAUUGUGCAAAUAUAAAAAAUAUAGGUAAUGCUUAGAGUACUUUCUAACGAUGAAACAGGUUACGAGAAAAUAAACGAUAAUUAUAUUUUUUUUUAAUAAGAAGAGUGAUAAAACAUAUGUUCCACAACGUUAAACAUGUGAAGUUUAAUUUACUACUCCCUCCGUUCCAAAAUAUAAUAUUUUUUAGAUACAAACUAAACAUACAAUUGUUUAGAUUUUGUAGGAUCGAUGGAAUAUUAAUUUUAAAUGAUUUAACAGGGGAUACCAAUGUCCCCUUCAACAGCCGAUCUUUUCGUGUAAAAGGGAAAGAUGCAUGAUGGAUACGAAAGCUAGUAGAUUAGAGGUAGCCGGCAUGCAUACGUGGCCCAAGCUUCACCAGCGACCCGGAUGUCUCCACGUAUAUGUUCGUGCCACUGCCUGCGAUUCUCAUUGGUUGCCAAAAAAAAAUCUGAUUAUAAGUUAUAUUGGUUUAUUAUCGAUCAGAAAAUAAUGUGUAUGUAAAAAUUUUAUAUAUGUAUUCUUAACGUAUUAACAAUCAAUACUGAAAGAAACUAUAUUACAAAUAUCUUAAAAUUAAAAUUAAAAUUUGCUUUAUUUUUGGCUUUUUACAACCGAUGGACUUUUUUUUUCUCUUUUCCCUUUUUUUUUUUGUGAAAGCUAUGGAUGGAUGUGAACAAGAGAAAAUCAUGUACCCCAUUGGUCUUGUACACGUGUGGUCUCUCGCUCGAGUGAAGUGGCUUGGUUACAACAAGGUAGGGAUAGUUACUUUCCUCUGUGAGUCUAUUACAUAGAUUUUAGACACAUGGAUGUAAACCAGUGGAACAAAUUAUCAGAUGUACUAUAACAAUUGAAUUUAGUAGGUCAUCAGGGGAGAAUAUCAAAUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.14%
ME_num:
MEP:
2.85%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
0.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.73274048867065 | 0.0127965712511015 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.97939177773786 | 0.00584149943130149 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.23501542016716 | 0.0308084015921849 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.12072349368736 | 0.0178336451245906 |
| 5 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.68126205047345 | 0.0345177915062602 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.79196014076861 | 0.00691289478915394 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.2663751092998 | 0.00274613849237567 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.8361194811333 | 0.0466180648378241 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.68962170875666 | 0.0131526788195146 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.43435992546038 | 0.00731845221661921 |