Chr:
Chr12
Start:
4455483
End:
4462361
Strand:
+
Ref_name:
LOC112937414
Sequence
(XR_003239978.1):
UCCCGUCCCGUCCCGAACCUGCGGCCCGCCGCGAGAGCGCUCCACGCCGCGCGCCGUCGCUGCCUGCACAGACGUCCGUAGAUGCCAGCGGGGCGGCCCGCCGGAUGUGGAGCAAGGCGGCGCAAGCGGCCAUGGCGGCGGCCACACAUGCUCGUCGGCCCCGCCGUCCCCUCCACCACCUCACAUAAUUUCCGUCCACACCUUUCGAGGCUGUGCAUUGGGUCGGCGACAGUAGCGAGAGCUGGCGGCCAUGGAUGAGAUGAGAGUGGGACGAGCAGCCGUGGCCGCGGCUGCGGAGUCGCUUUUGGAGGCUACGUCGGCGAGCCGUGCUCUCGACUCUGUCAAAGACCCCCGCAUCUCCCCGAGCUGUUCUGAAGAAUACAAGUCUGAAGAGCUACUUUCAGCUGAAGAAGAAGAGGAAGAAGACGACGAUGAUGAUGCAAUCAGCUGCUGACGUACUUGUCGAUGAUGGUGGCGAGGGUGGUCUUGGGGACGGCGCCGAUGACGCUCUCCUUCUUCUCGCCGUUCUUGAACAUGAGGACGGUGGGGAUGCUCCGGAUGCCGUAGUUGGUGGCGAUGUUUGGUGAGUCGUCCGUGUUCACCUUGCAGCACUUGAUCUUGCCGACGUACUCCUUGGCCAGCUCGUCGAUCACCGGCGCGAUCAUCCUGCACGGUCCGCACCACGGUGCCCAGAACUCCACCAGCACCGGCGCCUCGCUCCCCAGCACCAUGCUGUCCCAGUUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.76%
ME_num:
MEP:
62.6%
HE_num:
HEP:
27.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.88
Avg Expression:
45.00
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.98196838987332 | 0.00196644695172483 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.45489409153525 | 0.0108839840366744 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.84593417902602 | 0.00131668006592593 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.06525498761416 | 0.00883815164739497 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.57973534675069 | 0.00202281695891634 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.87469214146082 | 0.00686854715386092 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.87409718257655 | 0.00188945189321472 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.21082985026359 | 0.00478121223124861 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.76710711070807 | 0.000878025069610651 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.17345743322844 | 1.15273764979058e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.57076089672431 | 0.00435738462607232 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.72990111543941 | 0.00204521274935794 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.35771417554244 | 0.00164228468327902 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.5412897242062 | 0.000244014376262963 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.06939154505613 | 0.00171758549931152 |