Chr:
Chr12
Start:
23709580
End:
23710885
Strand:
-
Ref_name:
LOC112937407
Sequence
(XR_003239973.1):
UUCAGUUUUCCCCUAUUAUCAAUGAUGUCCUCCUUUACUCACCAACCUCAUUUGUCGACAUCUAAACUUUAUUUAUUUCCCUUGUCCUAUAUACAUUAUGUGUCUGUUUCUCUGCUCAAAAUUGGUCGAAUUUCUUUUGACCGUUGAUGGAGAUCCAACCGCCCAGAUUCUCCUAUCUUCCCUAUAUAAUCCCACCUAUGUGACCCAACACUCCAACCCUAAUCCCCCUAGCCGCCGCCUCGAUCAACCGCUCCUACGCUGCCUCCAUCUCCCUCGCCGGCACCAGGGCUGCUCCUGGUGCCGGCGAGGCCCUUUGUGGCUGCCACCUCUUGUGCAAGUGAGAAAUUUGAUUCCACCACCUCAUACUUUCUCCUGCGCCACCCCUCCACCGCUAUGACUGCCAUCUUUGAUCUUUCCAUCUCAAGUUGCCGCCAGAUCUGCUACUUAUCACCACCCACCCUACUCCCUACCUUCUGGGGUAGGGAGCUCUGGUAAAGGCCAACUCUUACCUGGUAAACUUGAGCACUGACCCAUCAGUGUUGGUGGGGAUGCAGCAGGUGAAGGGGAGUGUAUCAAAGUGGAACAAUCAAGAGAUAGGAGUCCUUGAUGUGAAACUGACACAGCUGAUAGAAGUGGACAACGCCGCUCAAGAGCACAAAUCAGCAAGAAAAAUUCAAAGGUGUCGCUGUUGGAAGCUUCUGCUGUAUAAAGCGGCUCCCACACUGAUCAAUGCUGCAAAAGAGAAAACAAGAACAGCAAUGUGGCCAUCAGAAAACAUAGUUUUAUGUCUUGCAUACAUGUGAAUGGUUCUUUAGCAGCCUAUCAUCUGCAACUUCAGAGUUGAUACAAAGUUCACAGACCUGCAUUGAAGCACAUGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.36%
ME_num:
MEP:
46.14%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.96
Avg Expression:
61.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.1812917286144 | 0.000985364117728531 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.03721048494312 | 0.017451824411782 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.95647268778252 | 0.000793788798919067 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.400830187736 | 0.00281861734108365 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.65589362023728 | 0.00611756401741407 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.30653285011316 | 0.0215457483047638 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.1042242302933 | 0.029054013486961 |