Chr:
Chr12
Start:
11176927
End:
11179045
Strand:
-
Ref_name:
LOC112937370
Sequence
(XR_003239908.1):
CCCCUCUCCUCAGGCCGACAAGUGGGUCCCCAACCCCCAGCCAACUCGAGCCAGAGCAGCCGCCCGCCAUGGCCGCCCACUCCACUGCAAAAUCCGCCACCUCCUGUCCCUCGCGCUCGCGUCUAACCGUCGGGAUGUGGUCGCCGCCCACUCCUCCACCAUUCCCCCCACUUUCCCCCAAAAAAAUGGCGCCGGAUUGACCCGCCACGAGCCCACGUCGCCACCCCAUGUCGCCGGUCGUUGCCGCCCAAAAUUCGUCCCAUCCCGGCCGUAUCAAAGCUCCCCGAGCCUAUAUAAAGCACCCUCGUGCCCUUCUCAUCUGUUUCCCCAUUUUCCCGAGCUCUCCCGUGCCCGGAAACCACCCCGCUACCGUCGCACCUCCCUCCGCCGCCCGCCGGCGCGUUCCAACCGCCUGUCACCGCCGCCCUAACCCUCGCCGCAUUGUGACGCCACCACCACCGGCUUCACCGCCGGAGGGCAAGACCGGCCACCACUUCCCCUCCCCAAACCGCCGCUGAAACCCCGCCGCCACCACCAACCCGAGCCACCGCCGCCUCCCGCCGGCGAGCGUCGCCUCGCCCGGCCAUGUCGCCGCCACCCACAGCGCCGCCACGCCCCACCGCACCCCGUCCACUGCUCCUCUUCCCCAAUCCAUUUCCGAAACGCCGCCACCACGUUCACCAUCUCUCUCCGCCACCAUCGCCAACUACAGCCGCACCGCGCCACCUCUCCGGCCGACCCCGCACUGCGUCGUCGCCUCCCUUGGUUCUGCAAGGACGAGGAGACCCUCGGCCACCGCCCAGCUCGCGUCCCAACCACUGGAAUCCAUUUCCCCUCGCGCACCGGUCGAGGAGGUGCUCGGCCGCCCUUCCUCACCUGCCGGUCGUCGUCGGUGCUUCGCUCGCGCUGUUUUUCCGCGGGGCGCCGCUGCCUCUCCUCGUCGUCGGCCGCCUUCCCGCGUCGCCUCCUCGCUGCUUCGGCGCUCGUGAGUAUAUUGCGCCGUUUCAGAAGUCCGCGGUCGUGAGGAAAAGAGUUCAGAAGAUCGAAGUGAAGAAGAAGGGCAAGUCACACAUUCCCCUUGAGCAUGUUGAUUAUUAGAUACCAUUAAUUGGAGUAAUAUUUAGUAAUGUAAGCACGGUGCUUAGAUUAUUAGAUACCAUUAAUUGGGGUAAUAUACAGUGGAUCAGAGGCCGGCCGCUGAUGGUGAAGGAUUAGUGCAGGUGUCCUCUACAUGUGUAUAUUAUCCUAAGUGCAAUUUCCUGGGGAGGGUACUCCUCCGUAUUUAGCCCCGGUUGGAUGGCCAUGACAGGUUGUCGUAAGGAACUCGGCAACCAGGGGCGGUCUCUCGAAACACUAGGAGGACACUGGGUACGAGGUAUUGGUUGCAUGAUUGUAUACUAGUAAGUAUAGAUUAAAGAUGUAUAUAUACUAGAAGUACAGGAAUGAUACUUUUAUUAUUCUUUCUCCAUUUAGCUUAGACUAUAUUUUAGUGAGAGUAGUUCUUAGUUCUUUCUUCUGUGUGUCACCCUACCCUUUGAACUAAAUUAACCCCUGCAUAGACUUGAUGUAUAUAAGUAAUAUAUGAAUUGUUAGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.76%
ME_num:
MEP:
39.02%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_differentiation_zone
Tau :
0.86
Avg Expression:
4.05
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.71229041063238 | 5.27132888154962e-05 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.16051135545124 | 0.00853130830338 |
| 3 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -5.69150936275217 | 0.0271185169898118 |
| 4 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -5.69155929509668 | 0.027210864125554 |
| 5 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -5.69155002225049 | 0.0271746644360557 |