Chr:
Chr12
Start:
12093307
End:
12094484
Strand:
-
Ref_name:
LOC112937363
Sequence
(XR_003239903.1):
GAAGCACCAUUUCUGGAGCGUCUCAACUGGCGAAGCGAUCCUUUCACCGGUUGGUUUCCACCAUGGUGUGACCGGUCGUUAUGCACUUGUGGGGAUCGGUGCAUACUUAAGUCAAGCCUCAUGGUACAAACUCGGGGUAGGAGAUUCUUCUAAUGCGCAAACCUUGAUCAGACAUACCGUACAUUGUGCAACUACAUUGAGUGGGUAGAUACGGAGGACCCACAAAAUGACGGAACACGUCCAUAUGCACGUAGUGAAUCAAGAUCGGACUACCUCAGGCGGAAGGAUGAGCAUGAACGUCGGAUUGAUGCGGAAGCUUUAGAAUGGCAGGUAAAUCCUCUGGGACUCCCCACAUGGCGGGAGCGCCCAGAGUGUCGUUGUGGUGACCGUUGUUAGGUGAUAAGGUCCUUAAGACAACGAACUCGAGGACAGAGAUGCUUCGUGUGUCCUAACAUUGACGACGAUGAUUUUGUCGAGGAAGUUAGGAAAUGUCAAUUCGUACAAUGGAUCGAUACGGUCAGAGUUACUUCCAUUGGUCAAACGAUAACGCAACCUGAGACGACCACGCAAUUCAUUUAGGCAUGGAUGGAGUAUGAACGUCAGGUACAAAUUGCAAGCUUAGACUGGAGGAACAAUCCAUUAGGUUUACCUAAAUGGUCGGAGCGUCCAAAGUGUGGUUGUAGAGAUCAUUGCCAGGUGGCUACCUCGUUUGCAUAACAAACAAUUGGUAGGAGAUACUUUGUUUGCCCCAAUGUAGACGACGAUUUCGUUGUAUGUAUAACAAAUUCCAAAUUUAACUAGCAUCUGCUUAUUAUUACUAUCAUAUCUGACUAACUACUAUGUUUGUUUCUUAGGGCAAUCCAAGGAGGUGCGCAUUCACUUUAUGGAUCGACAAUGUCAAUCCAACAUAUGAUGGCCAAAAGAUAACUGAGUCUGAAACACAGGUAGAGUACCAGCGAGAGAAGGAGCAUCAAAAUGCAAUACAUGUUGAACAGCGCAGAAGGGGUCGGUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
97.76%
ME_num:
MEP:
1.22%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.48
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.30310073649229 | 0.0458419169719666 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.48308307394852 | 0.0357087535570194 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -4.60736822431397 | 0.024107116538418 |