Chr:
Chr12
Start:
21570501
End:
21571192
Strand:
+
Ref_name:
LOC112937357
Sequence
(XR_003239891.1):
UAUCAGCUCCUGGCUAUGGCACAACUAGACAAAAAACGUAAAUCUUCUGCAAUUGAUGAGGAUCUUGCUCAGGAAGGUUCAUCUCCUCGUGAACAUGAUUGUCAGAAAGCAUCAGUUGUGCGUGCGCUGUUCGUAGACAAACUGCCCCCACAGCCCCCAAAAUGACUUGAGGGCUCCAUAUAAUAUCACCCCACCAAAGCGGUCUUUUGCACCUGGCAUGCCAAGGCGUAUACUCCUGUCCCUGAUCAAGCAAGACUAAUGCUCACAUAUUUUGCCCAAUGUAUUUUGCAGUGGGAAUAUAAAUAGGGGAUGUGUUCUUUUGUGCAAGCCAUUAGACCAAAUGACAUUACUUCUACGUCUUACAGGCUUGCGAGCCCUAGUGGCUAGCAGAACGAUAAAUGAAUUCGUAUAAAUAGUAUGUGGUGUCUGUACGAUAUGCACGUUCUAAUCAAAUAUCGCCAGAACUUAUACUCUUAUAAUUGGUGCUAUAUCUAUUCGCUGCACACUGUUUCCCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
15.85%
ME_num:
MEP:
6.3%
HE_num:
HEP:
77.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
68.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.22531224655476 | 0.00326112192647094 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.08238249981526 | 0.00855245804778599 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.72102303757157 | 0.000765446672954228 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.04335997834217 | 0.00122190465502778 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.08186561269776 | 0.0130083701140741 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.24276705136639 | 2.952354097941e-08 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.0974082245792 | 0.00173578973312264 |
| 8 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.25291417542198 | 0.00155762771481676 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.03111480051583 | 0.00261314679259806 |