RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112937310

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

23989534

End:

23992700

Strand:

-

Ref_name:

LOC112937310

Sequence
(XR_003239818.1):

CUAAUUCUUCCUUCGUCGUUAAGGUAUCUCUUCCCCCCUUAAUUUCUCUACUGCUAAUGGCGAUAAUGCACUGAGAGAUCUGAUCCUCGCCCUACUGAGAGAUGCCUCCCUUAAUUACGUCCAGCGGGUGGUGAACUGAGAGAUAUCUGUUGGCCUUUGUCGCAGGCGCAUGCAGCUGCCGUGCGCCGGUGACCAGCGGCGCCGGCCGUCAGGAAAGCUAGCUGCAUGCGGUACCUCCAAGCUCAACGGCGGCCGGGGAGGAGCUAGCCGUCUGGAGGUCGACGACGCAGGAGAGGCUAUUACCUCUUGGACAUCACUCCACGUGGACUGCAAUAUGGAGAUCGAUAUACAACCGGUGAACCAUAUGAUGGAAAGACAUAAUUAAUUUUGAGCAAAGCCAGAUGCGUAGCUGGUCAAAAACUACCAGAAAAACGAAACACAAAGCAGAUCGACACAAGAUUAUUUGUAACACUUGUGCUGGCAUGACGUUGAACGACAGGAUGGGCUCCCCACCACCUCCGUGUAGCUGAGCGAGCUGCGCAACCAGUAAGGCCUUGUUCGGUUACGUCCGGAUUUAAUCCGGACCGAGAAUGACAAGCACAGUAAGAAAUUUAUAAUAUAUAUAAUAAGAGACCAGGAUUUAUUCCAGACCGGAAACCAAUUUACUCAUGAUAAGGACAACAAAACAUUCGGAUUGGUUCCACACCUCUUGACUAGUGGAUUGUCGACCCCCGAUUUUGGAAAUCGGAAAUCUUCUGUGUUUAUCAGUACCAAUCCCUGGAUCAGUAGUUGGUACACACAUACAUAGCCGAAUCACAACAUAUCACGAAUGAAUUCAGGCUAAGAGAGUUAAAUGCUUACAUUAGGGCCAGGCAGGCCAACAACUAUCAGAGAACAACAGCGGAAGACAAAAUAAUACAAGGGCCCGGUUGACAUGCCACAAGCAGUCGACUGGGGAACGAGAUCUAGAAUGGAAUCGCACUCCGAUCAUCUUGUUAAGUACGCAAGCGUACUAACAAUGGCUUCUCUUCAACACUCUGCUAAAAAAUAUAUAUAGAGCAACAAUGAGUACAAAAGUACUCAGCAAGCCACCACACAAAAUGCAGUAAUGUACAGGAUAAUACAAGGAGUGGCUAUGGUUACUUUGCGUAAAGCUGAGUUUUCAAAUAUCAUUUCACAAACCUAAGACCUAGCAUAAACUGGUCAAGUUUUAAUUCCAUUGUUCAUUAAACAGCGACGGUUCUGUCCACCAUCCAUUGUGUUCCCAAGGAUAGCUUCCCGCCACUGGUCGUCAUGGUUUUCUAGGGUCUACCCCUUCUCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

186

LEP:

37.8%

ME_num:

261

MEP:

53.05%

HE_num:

44

HEP:

8.94%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

2nd_leaf

Tau :

0.84

Avg Expression:

6.36

Tip: OSA-LNC112937310 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA6.110373292440353.84876579074495e-05
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.029291668707070.000111216280094211