Chr:
Chr11
Start:
9460427
End:
9462683
Strand:
+
Ref_name:
LOC112937020
Sequence
(XR_003239571.1):
ACAAAACGGAUUUCUCUAGGGGGUUUUGCCAUGUACAGAUAAAUUAAUAUUUAUCUACAAAGCUGAUAAAUUCAAUGAUUCAAAGAAGUGUCAAUGAUUUUAAAAAACUCACAUUAACGCUAUCAUGUUCUAUCCAGAUUUGUAGACGAAAUAAUUUCAAUCAUAAACAUGUAAGGACACUUCCAAAACUCUACAUCACCUUGCUGUGUCACGUAAUUAAAGAGGAGAAAGAAAGGAGAAAACAAUGUUUUACACCAGACUUUUUCGUAGCACAGAAACAAAAAGAGAAACGACUACCAUUUUAAACCCACUAAUAGACACACAAUAUACAAUAUGCGUUGUGUUGUUUCUGUUGCAACGUCACAGGUACAACACAGCCACGUCCUGUGCAUGCUCCUCAAUCCUGACAUCCCCACUUUAGCAAUUGGAAAUUUCUUUGUUAUUUUCAUCUUUCUUCCAUACCACAAGCAUGUGCACUGUUAGAAUUAAAUCGGCUAGUUUCAAUUUAAUUCUAGUAAAUCCCAUGGGCCCACAAUUGACGUUAAGAGAUUAAUACCACCUUAGAAUCCAAUGCGAAAGUACCUCAACUUAAAUAGGUUGUUAAUUGAGAUCACUUGUUGAACGGUUGAGGGGGUGAUGGGACUGCCACACGCGCACCAAGUCAGGUCGGCCAGUCGGGUCUGGGGUGUACGAGACAAUGGCUGCUCUCCUUCCGGACGUUUUUUUUUUAUGAGUAAUGUAACUGACAGAGACUCCUUACCACUGAAACGGACAGAGCAAUCAAUCGGGUUUAAUCUCUCCCAAAACAUAUCUCUCUCAUUAUCCUCCACCUCCAUGAUAGACAGAGAGAUUCUCUCUUCCUGACACUUUGCUUCGGCUCUCCCCGGUCCUGAUCACUUGCGCGCACAAGUGUUCGCGACGAGCAGACCUCCAGAACUCCAUCCACCUAAGUACAUGCACUGAUAGGUAGGCAAUCAAGUUUUUGCGGAGCGUGAAGAACACGCGACUACUCUCAGCACUGCUUCCUCUGUAUCACGUUCUUCUUGCUCUACAUCAACAACUCGGAUCAUAUCGAUCACCAAUGGAGGAGAAGACGGCAACAACAAAGGUGGUGACAUCACCAACACCUUCGCCUUUGGAUCCAAAGCGUUCUUCAAGUUGAGGAAAUUGAGCUCCAUCUCAAGCAUUUGAUGCUGCUGUUUACACCCAAAUUUAGCACAUAGGAUCAAAUUAAAGAAGAAUUGCAAAGAUUUGGGAGAAUCACCGGGUUUCCUCCACAGGGCCGGUCUGACCGUCGUUUGAUGGUGGUCAGACCAUUGCUUGAGGGCUGGUCUGACCGGCGGCAUGUGGCCAGUCGGACUUGCAGAGUCCGAGACCAAGUAUGUUUUCAUCGGGUCUUGGGUUUCCUUACUCGCGAGGCUAUGUUUCGGGUUUCCUUUGGUUUCUAUCCCGAGUUGGAUGUGGAGGAGGACCCGUAGGAGAUAAGACCAACCCCAAUAUAAGGGAUAAGGCCGGUUCAACUGGAGGAGAAUCUACACACAAUCCAAUUUAGCCAAUUGAAUCGUUUUUUUCAAUAUUUCAAUCUACUUCUAGUCUAGUUCGUCCAUCUUUAUCAAUUUGCGCCGUAAAUCGGCCGCCUUCGCUACGAGAGUGUGAAAUCCUUUGUAGGUUUGUCCCGUAAACCUUUCGUUUGCCCACGAGAUGGGUAGUUAUCUAUUGUUUUAUCUAAAUUAGCUCCGCUAGCCGGUUUAAUCUAUCAAAACCCAUCUUGGUCCAGCUUUUGCUAGAUUGGGGUGGUUGGCGACUCUACAAUCACCGCAAGGCGUUUAGGUAUCCCGAUCAUGCUUGUCUACUUGUCAAAAAAGUUGCCAACAGCUGCCGCCGGUGGCAGAGCUCCAGUGCAAGCACUACGCUGCUUGAGCUGUUCCCGGAUGGGUGGUUCCUCAAGCCUGACAGGGAAGAGAGAAAGAGAGAGGAGAGAGGGAGCUACAGGUUGAAGAAUAAUAUAGGCCCAAAUUAACUGAAACAAUGUGUAAAGAUUAGGUGCAAAGUGAAAGAUUGAUUUGCCCCUUGUUCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.34%
ME_num:
MEP:
3.25%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.99
Avg Expression:
1.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.5600291491092 | 0.0124343196449469 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -4.24055558959901 | 0.00160550631928431 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.28151280376641 | 0.000326886387985402 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.27447604177763 | 0.00834122819850916 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.48519773164515 | 0.000438411700227373 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.79227295944092 | 0.00679788870834897 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -2.68450713132017 | 0.0162673921010041 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -3.72573514922177 | 0.00440067933849324 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.39284037960734 | 0.000223981171510477 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -4.9970607201677 | 0.00137569869683366 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.09307086818532 | 0.000459125459793604 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -6.53316045745429 | 6.93927746608524e-06 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.94543693219218 | 9.71502563499295e-05 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.67359692183321 | 2.60260400115901e-06 |