OSA-LNC112937019


Function Link


Basic Info

Chr:

Chr11

Start:

26276657

End:

26279692

Strand:

-

Ref_name:

LOC112937019

Sequence
(XR_003239567.1):

AUCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGGUACACUUGGCGGCAUCACUAAUUUAACUCUGAUUUAACUUACGCGGAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUAC

Sequence
(XR_003239568.1):

AAUCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGAAGUUUCUGCAGGUACACUUGGCGGCAUCACUAAUUUAACUCUGAUUUAACUUACGCGGAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUACAU

Sequence
(XR_003239569.1):

UCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUAC

Sequence
(XR_003239570.1):

AAUCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGUUUCUGCAGGUACACUUGGCGGCAUCACUAAUUUAACUCUGAUUUAACUUACGCGGAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUACAU


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

40

LEP:

8.13%

ME_num:

395

MEP:

80.28%

HE_num:

56

HEP:

11.38%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.67

Avg Expression:

8.23

Tip: OSA-LNC112937019 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-7.376272608491592.34460217741967e-06
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.343935192958620.00249223815901371
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.928113918730740.0394776958874647
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA2.013116970805550.0346604695765845