Chr:
Chr11
Start:
26276657
End:
26279692
Strand:
-
Ref_name:
LOC112937019
Sequence
(XR_003239567.1):
AUCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGGUACACUUGGCGGCAUCACUAAUUUAACUCUGAUUUAACUUACGCGGAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUAC
Sequence
(XR_003239568.1):
AAUCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGAAGUUUCUGCAGGUACACUUGGCGGCAUCACUAAUUUAACUCUGAUUUAACUUACGCGGAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUACAU
Sequence
(XR_003239569.1):
UCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUAC
Sequence
(XR_003239570.1):
AAUCCAACGGCGCAGCGAUCCCCACCCAGCUCCCCGGCUCAUCCCUCACGCAUCGGGGGAUCGCGCCCGCAUCCAUCGCAUCCGCCGCCGUCGCCUUCGAUCCUCCCCGCCAUCGCCGUCCUCCCCACCUCGUCGCCGACCCAGCGCCGCCAUCGCCUUCCUCCCCCACCGCGUCAAUCAUCGCCGUCCUCCCCCACCGCGUCGCCGACCCAGCGCCGCCAUCGCCGUCCUCCUCCACAGCGUCGCCGACCUAGCUCCUCGCCUCAUCCCUCCCACACCAGCUCCCUCCCCCACUGCUGUCCUCGCCACCGCCAUCGCCGUCCUCCCCCAGCACGUCGCCGACCCAGCGCUCCUCUCCGUCGAUCUCCACCACGGUCCCUUUCGCGCCACACCGGAAGCUGCCCGCCAGUCCUCCGGUCGUCGCUGGUUGCUGUCGGCAGGUGGAUGCAGUACUCUGGUCGCCCGUCUCCCCUCCAUCACCGAGUGACAUUCCCAUCUACAAAAGUUUCUGCAGGUACACUUGGCGGCAUCACUAAUUUAACUCUGAUUUAACUUACGCGGAAGCGUGCUAGGGAGCGAUAUGCUGCUCUUAGUGCUGACGACAAGAAAUUAAUCUUAGUGCUGACGACAAGGAAGCUAGGCUUCAAAAGAUGCGAGAGUAUCGAUCCUGUACCUACCCAUGGUAUUUAAAUUAUUAUCUCACAAACGGCAUAGAUCUGAAGUGAAAUCUUGCCACUGGACACAAGCUCACUCUUCUUCAGGACGUCAGGUUCCUUCAUCACCCGGGUACUCUUCCCUACUGUGAAAGAGGAUGAUAUGCUUCCUACUCAAAUCGCUAUUCAGUUGACUAAUGAGUAUGAAUUUUUUCCGCUUCUCAUUUAAAUAGACAGUCUUCUUGAUUUGAUAACCAUAUUUUACACUUUCUCCUUUCAAUAGCUGGAAUAUUAUAGCGGCACCAUUCAUAAAUGACAUUAUCCUAUUCGGGACAUUUCUGUCUAUAAGUGCUAAGUUGACAGGUGAAUGCAAAGUUCAAUUCAGUGCAGUGAAGAACCUGCCAACAGAUCAAGGGCGAGGGCAGGGGAAGGGUGCUGCAGCGCUUCAACACAUUAGCGCUUCCAGGCUCUAGAUCACUCUAGCGUGUGGCCUUGGUGUACUAGCCACUUGCCAGGAAAAUGAGUGUGGGAGUGGGAGCUUAUGGCACGAGCUGGAGACAUGGAGAGAGAUUAGCAGGUUCAUUAGAAGUGAAAUUGUAGCAGAGAUUUGUAUAUAUGUAUAUGUAUAUAUAUAUAUAUGUAUAUGUAUACAUGUACAUGUACAUGUAUAUAUAUGUAUACAUGUAUAUGUACAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.13%
ME_num:
MEP:
80.28%
HE_num:
HEP:
11.38%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.67
Avg Expression:
8.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.37627260849159 | 2.34460217741967e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.34393519295862 | 0.00249223815901371 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.92811391873074 | 0.0394776958874647 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.01311697080555 | 0.0346604695765845 |