Chr:
Chr11
Start:
8123377
End:
8125442
Strand:
-
Ref_name:
LOC112936969
Sequence
(XR_003239547.1):
UUUUACGCUUUAUUUACGUUUGUAACUGUUUAUUACUUGUCGUUUUGUGUACCCUGGCUGGUCCUGGAUAGGGAUUUAAUACACAAAAUAGUCUGGAAAUUUGGGCUAAAUUUCGGCGUGACAGUAAUCCACCAAGUUGGCAAUCAUGGAAAGUCACGGGUCGCGCUAAGACGUUAAACUGGAAUGAAGUGUCCUUGCUUAUGUUGGAAGCUGAUCCCCAAGAUGCAUCCUUUAUGCAUAAUGUUCAUAUGGAAGCGAAGGAAAAAGUAACUAAUAAAUCAAGGAAGGAUGUCAAGGCACUAACUGAGAGAUACACAAGCAACACUUCAUUAGUAGCGAUCCUUAUAGCAACAAUUACAUUUGCAGCAGCUUUCACCUUGCCUGGAGGAUAUAGUGCUGUGGAGAUUAUGGUUACCCCAUAUCUACAUGGCGGUUAUAUUCCAGCUGGAUAUACGGUACCAAAUAUAGAUAGAAUAUCUCUAUGAGGACUCGGGUUAGAUUCUAAACUUGUAUGUUAAGAAAAUACCUGGGAUCCUAGUCGGUUACGAUUGUAUUUUAUCUGUAAUCCCAUAUCCCGUUAGGAUAUGGACUGUACUUUAUAUUACAGAUCCCUUCCCCAAUAUAAGGAGGGGUCCGGGUUCCUCUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.68%
ME_num:
MEP:
27.03%
HE_num:
HEP:
5.08%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.81
Avg Expression:
3.10
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.73843206192368 | 3.71061726916747e-16 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.6355435849634 | 0.0322879510620793 |
| 3 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.92114060948763 | 0.000925181466354647 |
| 4 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -3.20126318809208 | 4.36527836676546e-07 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.60544238173351 | 0.0361087476291187 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.53432362719906 | 0.0213726487195959 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.83083771373688 | 0.000198806880709141 |