Chr:
Chr11
Start:
26220992
End:
26221586
Strand:
-
Ref_name:
LOC112936934
Sequence
(XR_003239460.1):
UCUGUUUCUCCUCUCGAACGAAUCGGACCACCCUCUUCACCGCCGUCGAGCACGGCACCGCCGCUUUGCCGGCGGCGGCGGCGGCGGAGAUGAAUGUUCAAGCAGGAAGGAUGCAAUGUAGACGUUUGCUGCUGGCCGGCGUUGGCAGGGGAAAAUUUUGGUUCUUCUCGGCCGGGUGAAUCGUGAUUUUACUGGGUAUCUCGCCUCCGCCGAAUGCGUGGGACGAUUCACACCCGCGCGUGUACUGUAGGUGUAAUUUCCCCCCAUUUUUGCAGUUCCAAGUAGAAAAUUUUCAUUUCAAUACUGAUUCUGAAUACAUUUUGGUCGGUUUGAUGAAAGAUUCGCAGCUACACCUUGGAUUUCUGUAUAUCAUGUUGGAAUCUUAGAUGCUGAUGAAAUGAUUGGACUGAAACCGUUCUCACCCACCAGCACUACUGAUGGUUUGGGUCAUCUUAUAUGUGCCUUCUGAUUAUGGAUUUC
Sequence
(XR_003239461.1):
UCUGUUUCUCCUCUCGAACGAAUCGGACCACCCUCUUCACCGCCGUCGAGCACGGCACCGCCGCUUUGCCGGCGGCGGCGGCGGCGGAGAUGAAUGUUCAAGCAGGAAGGAUGCAAUGUAGACGUUUGCUGCUGGCCGGCGUUGGCAGGGGAAAAUUUUGGUUCUUCUCGGCCGGGUGAAUCGUGAUUUUACUGGGUAUCUCGCCUCCGCCGAAUGCGUGGGACGAUUCACACCCGCGCGUGUACUGUAGAUUCGCAGCUACACCUUGGAUUUCUGUAUAUCAUGUUGGAAUCUUAGAUGCUGAUGAAAUGAUUGGACUGAAACCGUUCUCACCCACCAGCACUACUGAUGGUUUGGGUCAUCUUAUAUGUGCCUUCUGAUUAUGGAUUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.91%
ME_num:
MEP:
16.46%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.93
Avg Expression:
6.54
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 6.55934262906559 | 2.00998211676162e-06 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.69237117381219 | 8.0152552343104e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.31293899176145 | 2.43537168719245e-06 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.81505822932887 | 6.64097773410842e-05 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.88772153093868 | 1.715288321735e-05 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.57980314403342 | 4.78446678554444e-07 |
7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 6.35710994932919 | 3.03303161785559e-06 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.21521638766339 | 0.000227944442009389 |