Chr:
Chr11
Start:
16205883
End:
16208603
Strand:
+
Ref_name:
LOC112936924
Sequence
(XR_003239428.1):
GCAGUGGCUGAAGAAGCAGCAGUGGCUGAUCAAGAGGAUGACCAGCUUGGAGGUGAUCUCCACGGAGGUGCCAUCCAUGUGCUUCCUUUUGAUAUCAACUUGUAUGCAUCUGACCAUCAAGGAGAAAUACAUCCAGGUGACAAACUACCAAAGUUGAGAGGAAAUAUACAUGAAGGUGGAGGAGAAUCAAACUCGUAUCCGAACUUAUGGAGUUUUGGACCCAGAAACCCAAUUAAACACCUCCAAAUGGACCAAACAUUCAUACCAAUGGAUUUAGGGGCCUAAAAUGAGUGUCCAGGCCGAAAACCGAAGCGAACGGAGCCGUCCCAGGUUCGGCCGAACCCUGAGUACGGAUGAACCCUCACGAAGGCCGUUGGCCCAGGCCAAAGUUGCGUUUGGUAGCAAUCCGCUUACCAAUGACGGUUAUGGCCAUUUUCACCGGUAGAAACCGUCAUAACAUGGACACUUGACAACACAAGAGAGAAGAUGCUCUUUGGAUGCUUGGAGGAUCUCCACUCUCUCAAGUCACCUCCACACUAUAAAUACCCCUCUCCUCCCUCAUUCUCACACACACCAAAGCAUGAGCUGAAUUAUAAGAGGCUCUAGUAUACUUUAUUGUAUAUUAGAUUAGGGAGAGAGUAAGGUAGAAGAAAUCGGAGGAAUUACGGAGUUGUCGGUAAUCUUCUCUUAAUUCUGUAUCUUGUUAAUUACUUUGCUUUAAUAGAAAUAUCAUUCUGAGUAAUUAAGAUUUACUUAGUGAGAAUUACUUUUUGGUUAGUUCCUAAUUAGCGUACAGGAUCAUUGUUCACUAUAGUUUAUUAAUUUAUAGUGAUUGCUUUAGUGUUUGAUCGGCACUAGAGUAGUUAUUAAUUGCGUAGACGCGGUGUCUAGGUAAUUAAUUUCCAGUGGUUGCUGCGUAUCCCACAGUACGUUUGAGGUGGGUGUAGAGGUGGUGACAGCCCUCAAGAGAACUUAAGUCCUCCCUGUCCAGGUACGUAAUAGAGCAACAUCUGGAAACAGCGGGUUGCCAGUGCCUGAAGUAUUGCGUUAGGAUUAAAAUUAAGCUUUCCCUAGACACUGUUUCUUAUUAGGAAAUCCUCUAUGCCCUCUGCCCACAUUAGCUUUGUGUCCUUGGAUGAACCUGACGAUGAGUUGAACUCACACGUUCCCUAUGGAAAUCGAUACUCUGGAAUACUCCCAGACGAUGCCGAUGCCAUGGAUCAAGUUCUGCAAGUAAAUGGAGGUCACAACCAUAAUGCCUUUCCUUUUGAUCUCAACUUUGAUGCCGAUGAGGAAGACCUACAAAUGCAUCCAGACAUGCAAGAGUAUGGCGUGUAUGCGGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.17%
ME_num:
MEP:
18.7%
HE_num:
HEP:
7.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
3.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -5.21461579856328 | 0.0444306234736946 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.55974993078693 | 0.0372872430419889 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -2.62431068151212 | 0.00072558990282407 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -2.80083189465169 | 0.00447701914913819 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.08609769128139 | 0.00278673552294637 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.39532001278217 | 0.007035602827069 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -3.19145344836971 | 5.1556805513771e-07 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -2.07049464107118 | 0.00123778042730279 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -2.46174434601074 | 0.000177424872743447 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.10123077882649 | 0.00481489938239783 |