Chr:
Chr11
Start:
4850420
End:
4854799
Strand:
-
Ref_name:
LOC112936916
Sequence
(XR_003239399.1):
GGCCCAACUAGUAUAGGCACCACGUGGGCCGCUUCCCCGUUCUGGGCUAACAAGUUUCAGGUUUCCCGCUUCAGCCCAAGCAGCCCAUCUUUCUUCCUUCCUCGGAGCGAAAUCCACCGCCGCCGCCGCCGCUCCAAACUCCGGCGACGACUCCACUACAGCCGUCGCCGCGUGCUGGCCGCCUCCUCCGUCUCCGGUGUAAAUCCGCCUCCCCGCGCCCCUCCGCGUCUUCCACCUCCGAAGAUUCAGAGAAAACCAAAGCUUCAGUUCGUAAUCAGAUGAAUGCAUAAAGGGAGGCCAAAUGAUCAAAGAAAGCUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAGCAAUGGCCCUCCUGCCUGACAAAAGUUAAUUAAGCAGUCCAUGUUCUUGAAAUUGAUGCACAACUGCACACGGUACAAGCACUAAAGAAGUAAUGAUACACCCUUUUACAGCAAAACAUAUCUGUGGAUCAUGCGUUGAUUACUAUGACAAUAAUUUGGCUGAAGAAUUGUGUAGUAGUACAAUGCAACCAACAACAGAUGAAUAUUCAUAUCGUUCAGCAAAGUGCAUCAUAUUCCGCUGUAAAACAAACCCAACAAGGCUUCCUGACCAAACAACAAUCCCAAAGGUGGUAGCGUACAUGACAAGGGCUUGUGAAAACUGAAAAGAAACUGCCUUAGAGAUGAACGAUGGAGAAGCCAGACUCAUACUACUCUGUUAAUCACCCUUUGAGAUGAACGAUGGAGAAGCCAGACUCAUACUGCCUUAGGAGCACUUCCAGUGAACAUUUGCUGGCCCAACUCAUACUACUCUGUUAAUCACCCUUUGAUAUGCAGUGAUGCACAUGUUUAGGAUAGAUGCAAAAGUUUGUUUCUAUCUGAUAAAAUGAAGCACAUGCUCUUCAGACACAGCACAAUCCGCGUUCAUGAAUUAUUUUAAUGUGGUGUUUGUGAUUCCUUUUAUGUUCGGAGAAGGCCUGAUUACAGAAAUGAAUGGAAAUGGCUGGUGCGUAUAGGACAAAGCCUCUUCUAAAAAAUCCUGCUACUACUUUUGUCAUCUACAGAAGACAAAGAACAUGUUUUCCAGUGAACUGUACGUUUUCUUAAAUUUGAGGCUGCUCUUCGCAAUCUAAACUACUUCCUUUUCUUGAUCUUUCCUUCCUAAACUUGGUAUUGCUUUGGUUCUAAUAUUUCUACUUGCUCACUCAUAAACUCUACCAAAUUAAUUCUUCUUGGCUAGGUACACCAACAAUGCUUCAAUAAAAAAUUGGGUUUAAUAUAGUGACUGGAUUGUGAUGAUUCAGCCAGAAUGAAUAAUGUAAAGAACUAAAGACUUCAAUAUUUGCAUAAAUAAAUUCAAGAAAAAAUUCAGUAACCAAAGCAACUUGAAAAUAACCACCUAUAAAAACAGCCACCUCCGUUUAUCAAUAGGACUAUGCAAAUCAACCUUAGGCUUACCUCAGCAUUUGUACAUUAAGGAUGAUACAAUAAUGGCCUUUAAUCCUUUUUCAUGUCACCUAGUACAUCUCGUAGUGACUUGAAGGUAUCUGCAACUAUUACUAAUACAUGGAUCAACUUUGUCACCUACACAGGUAUGGAUUUAAUGAUCAUCAAUCGUCACAGUGAAGAGUCUCCAACCUUGGCAUCAAUUUUUCCCCUGGUCCAGCCCAAUAGAAGGACAAGCUGAAUCCAAGUACAAAAGAAGCUGCUGCGACCCAUAUAGCUGAUCUGAAAUCAUCCUGGGAGCCUUUCAUACUGCCUGAAGUUCUAUUUUCUUCCGUGUCUAGUAUGAUGCCUGGAUUUCCAGUUACAUUGACCAUCACCCAUUUAGGUAGCUCAGGCAAUGGUCCGGAAAGGUUAUUGUCUGAAAGGAAUAGACACAUUAAUCUUUCCAGGUUUGCAACUGAGGAUGGCACCUGACCUGACAAGUAGUUUUUUGAAAGAUCAAGACGCUCCAACUUCAGAAAGGUUCCAAUGUUUGUGGGGAUAAUUCCAAUCAACUCAUUGUUCCCCAGAUCAAUGGUGAUCAGAGACUGCAGCAAGCUGAUCGACGAUGGAAUCACACCAUUGAGCUUGUUGCCAUGCAAACCUAAGUAGCAGAGCUUCAGUGACUGAGUAGAAUUUGUGAAAGGUAGUUCUCCAGUGAAUGAGUUAUGACUCAGGUUAAGUAUUUCCAGGGCUGACAUGUCAGAAAAUGAACUUGGGAUAUCUCCACUGAGAUUGUUCUUUUGGAGCUUCAAGACUACGAGCUGCUCAAGGUUGCCCAGCCCAAUAGGUAUAUUACCCUGCACCUGGUUUGAUGACAGAUCGAUGAGUGCCAAGUUCUUGCAUCUGCUGAGCUGCCAAGGUAUAUAUCCAACCAACUUAUUGCCAUCUAACAGAAGAUUAACCAAGUCAAUGGCAUUGCCUAUUGAUUCUGGGAUGCUUCCACCGAGCAAGUUUCGACCAAGCCGAAUACUAUGGAGGCUCCGAGAAACAUUCCCAGGGAUGAACCCUUCAAGCCUAUUUGCAGUGAGGUCAAUGGUCUCCAAAGUAUCAGGUGAGAGCAGUUCAGAGGGUAUAUCACCAUUGAGCAUGUUGUAACUCAAAUCCAACAUCCUAAUGUUCCUGGUAAUUCCUUGAGGAAUUGAGCCAACAAAAUUAUUCUGAUUACCUCCAAACCGAAACAGUGUGGUGACAUUCAGCAAGCUCCGUGGAAUUUUUCCUGUCAGGUUGUUUUCUGAAAGGACCAAAAUCCUGAGUUUUGGGAAGCUCAAGAAGCCAUCUGGGACAUCACCGUGUAGAUUAUUGCGGCAGAGAUCCAACAGAGUAAGAUUUCCAUACCUGAACAAACCCAUUGGAAUAUGAUCACUGAAAUUAUUACCCGAGAGCACGAGGUCUUCCAGAGAGGUAGCGAUGCUUGUAGGGACUGGGCCUUCAAAACCAUUGGAACUAAGGUUCAAGCUUCUCAGUUUUGGCAAAUCACUCAGCUGGGUACUUAUAUUGCCAUUUAAAGAGUUGGAGGACAAAUCAAGAACCUCGAGCUUGUGAAAACCAACGAAAUCACCAAGUUGACCAGACAGCAUAUUGCUACUGAGAUCCAGCACUUGCAAUUCAGCCUUCAUGGGGCACGGAGAGAGUUGGCUUGGCAAAUCGGUGAACGAGUUUCUCGAGAGGUUAAGAGAUCGCAAGGUAUGAAGAUUGCAUAUGGACGCAAGGAUGGUGGCAUUGGAGAGGCCACAUCCGGGGAGGGAUAGCCUAGUGACAAACGCAGAGGAUGCAACUGAAGAGCAAUGAACACCACUCCAUUGGCAUGGAUUUGAGCAGGUGUUCCAGUUCUUGGUACUGCCCACCGAGCUCAGAAUAUCUCGCAUGAUGUCCUCGUGUGCCUUGUUCAGUCGCGCUGGCGAUUGUUCGGUGGACGCUGCCAUGGGCACACCAAGAAGCAAGAACAGCAGCAGUAACAGUAAGCACAGGCUUCUAUCGGGAGCAUGGUGCCGACUCAUCACCUCCAUGGCUACUCUCAGCACUUUCUCCAUCUUUCCUCCUGCAACAUAUGAAGACAGAGAAGCACAAUGUUCAACACAAAAAAUGUUCAAACUUCAGACGUUGUGUUGAAGAACGGUGACACAUGUAGGAAGGGGUCCAGCAGACUGACUGAGCACGGCCAGCAUUCGUUGUCACCGGUUCUCAUUUGUCAACCAACCCCAGAGACCAUUCAUCGUGCAGCGUCUUGACUUGCAAUGGUUUUUACUGGGCAUCAGGAUGUGGCCACAAGUCGGUGUCACAGUUGGCAAAAACACUGAAAUCGUUCGAGCAAAUGGAGCUGGUUUGCAGGAAAGAGGAAUGAGAUUUGCAACCCAAAAGAAUUAAAAUUCGACAGGGAGAUGGAUAACUACAUCAUCAAGACGCUAUGCUGUCACGAUUGACAAAAGCACGCGCACACGUAGAAAUUGUAAAAUGGUAGUAGCUGUCAUUCAGUGAUCAAACACAAUGUCGUAUGCUACAAUUGUUCUAAUUUCUAAAAUGAUUGGUACAUACUAAUCAUAUAAACAUAAAGAGAUAACUAUAGACUCAUGUUAAAUGUUUAGGAGAUUGUAUCUUUGUUGUUCAGCACAAAUUCACGAUAUAUUGUAUCAUCAUUAUGUUA
Sequence
(XR_003239400.1):
UGGGCCCAACUAGUAUAGGCACCACGUGGGCCGCUUCCCCGUUCUGGGCUAACAAGUUUCAGGUUUCCCGCUUCAGCCCAAGCAGCCCAUCUUUCUUCCUUCCUCGGAGCGAAAUCCACCGCCGCCGCCGCCGCUCCAAACUCCGGCGACGACUCCACUACAGCCGUCGCCGCGUGCUGGCCGCCUCCUCCGUCUCCGGUGUAAAUCCGCCUCCCCGCGCCCCUCCGCGUCUUCCACCUCCGAAGAUUCAGAGAAAACCAAAGCUUCAGUUCGUAAUCAGAUGAAUGCAUAAAGGGAGGCCAAAUGAUCAAAGAAAGCUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAGCAAUGGCCCUCCUGCCUGACAAAAGUUAAUUAAGCAGUCCAUGUUCUUGAAAUUGAUGCACAACUGCACACGGUACAAGCACUAAAGAAGUAAUGAUACACCCUUUUACAGCAAAACAUAUCUGUGGAUCAUGCGUUGAUUACUAUGACAAUAAUUUGGCUGAAGAAUUGUGUAGUAGUACAAUGCAACCAACAACAGAUGAAUAUUCAUAUCGUUCAGCAAAGUGCAUCAUAUUCCGCUGUAAAACAAACCCAACAAGGCUUCCUGACCAAACAACAAUCCCAAAGGUGGUAGCGUACAUGACAAGGGCUUGUGAAAACUGAAAAGAAACUGCCUUAGAGAUGAACGAUGGAGAAGCCAGACUCAUACUACUCUGUUAAUCACCCUUUGAGAUGAACGAUGGAGAAGCCAGACUCAUACUGCCUUAGGAGCACUUCCAGUGAACAUUUGCUGGCCCAACUCAUACUACUCUGUUAAUCACCCUUUGAUAUGCAGUGAUGCACAUGUUUAGGAUAGAUGCAAAAGUUUGUUUCUAUCUGAUAAAAUGAAGCACAUGCUCUUCAGACACAGCACAAUCCGCGUUCAUGAAUUAUUUUAAUGUGGUGUUUGUGAUUCCUUUUAUGUUCGGAGAAGGCCUGAUUACAGAAAUGAAUGGAAAUGGCUGGUGCGUAUAGGACAAAGCCUCUUCUAAAAAAUCCUGCUACUACUUUUGUCAUCUACAGAAGACAAAGAACAUGUUUUCCAGUGAACUGUAUGGAUUUAAUGAUCAUCAAUCGUCACAGUGAAGAGUCUCCAACCUUGGCAUCAAUUUUUCCCCUGGUCCAGCCCAAUAGAAGGACAAGCUGAAUCCAAGUACAAAAGAAGCUGCUGCGACCCAUAUAGCUGAUCUGAAAUCAUCCUGGGAGCCUUUCAUACUGCCUGAAGUUCUAUUUUCUUCCGUGUCUAGUAUGAUGCCUGGAUUUCCAGUUACAUUGACCAUCACCCAUUUAGGUAGCUCAGGCAAUGGUCCGGAAAGGUUAUUGUCUGAAAGGAAUAGACACAUUAAUCUUUCCAGGUUUGCAACUGAGGAUGGCACCUGACCUGACAAGUAGUUUUUUGAAAGAUCAAGACGCUCCAACUUCAGAAAGGUUCCAAUGUUUGUGGGGAUAAUUCCAAUCAACUCAUUGUUCCCCAGAUCAAUGGUGAUCAGAGACUGCAGCAAGCUGAUCGACGAUGGAAUCACACCAUUGAGCUUGUUGCCAUGCAAACCUAAGUAGCAGAGCUUCAGUGACUGAGUAGAAUUUGUGAAAGGUAGUUCUCCAGUGAAUGAGUUAUGACUCAGGUUAAGUAUUUCCAGGGCUGACAUGUCAGAAAAUGAACUUGGGAUAUCUCCACUGAGAUUGUUCUUUUGGAGCUUCAAGACUACGAGCUGCUCAAGGUUGCCCAGCCCAAUAGGUAUAUUACCCUGCACCUGGUUUGAUGACAGAUCGAUGAGUGCCAAGUUCUUGCAUCUGCUGAGCUGCCAAGGUAUAUAUCCAACCAACUUAUUGCCAUCUAACAGAAGAUUAACCAAGUCAAUGGCAUUGCCUAUUGAUUCUGGGAUGCUUCCACCGAGCAAGUUUCGACCAAGCCGAAUACUAUGGAGGCUCCGAGAAACAUUCCCAGGGAUGAACCCUUCAAGCCUAUUUGCAGUGAGGUCAAUGGUCUCCAAAGUAUCAGGUGAGAGCAGUUCAGAGGGUAUAUCACCAUUGAGCAUGUUGUAACUCAAAUCCAACAUCCUAAUGUUCCUGGUAAUUCCUUGAGGAAUUGAGCCAACAAAAUUAUUCUGAUUACCUCCAAACCGAAACAGUGUGGUGACAUUCAGCAAGCUCCGUGGAAUUUUUCCUGUCAGGUUGUUUUCUGAAAGGACCAAAAUCCUGAGUUUUGGGAAGCUCAAGAAGCCAUCUGGGACAUCACCGUGUAGAUUAUUGCGGCAGAGAUCCAACAGAGUAAGAUUUCCAUACCUGAACAAACCCAUUGGAAUAUGAUCACUGAAAUUAUUACCCGAGAGCACGAGGUCUUCCAGAGAGGUAGCGAUGCUUGUAGGGACUGGGCCUUCAAAACCAUUGGAACUAAGGUUCAAGCUUCUCAGUUUUGGCAAAUCACUCAGCUGGGUACUUAUAUUGCCAUUUAAAGAGUUGGAGGACAAAUCAAGAACCUCGAGCUUGUGAAAACCAACGAAAUCACCAAGUUGACCAGACAGCAUAUUGCUACUGAGAUCCAGCACUUGCAAUUCAGCCUUCAUGGGGCACGGAGAGAGUUGGCUUGGCAAAUCGGUGAACGAGUUUCUCGAGAGGUUAAGAGAUCGCAAGGUAUGAAGAUUGCAUAUGGACGCAAGGAUGGUGGCAUUGGAGAGGCCACAUCCGGGGAGGGAUAGCCUAGUGACAAACGCAGAGGAUGCAACUGAAGAGCAAUGAACACCACUCCAUUGGCAUGGAUUUGAGCAGGUGUUCCAGUUCUUGGUACUGCCCACCGAGCUCAGAAUAUCUCGCAUGAUGUCCUCGUGUGCCUUGUUCAGUCGCGCUGGCGAUUGUUCGGUGGACGCUGCCAUGGGCACACCAAGAAGCAAGAACAGCAGCAGUAACAGUAAGCACAGGCUUCUAUCGGGAGCAUGGUGCCGACUCAUCACCUCCAUGGCUACUCUCAGCACUUUCUCCAUCUUUCCUCCUGCAACAUAUGAAGACAGAGAAGCACAAUGUUCAACACAAAAAAUGUUCAAACUUCAGACGUUGUGUUGAAGAACGGUGACACAUGUAGGAAGGGGUCCAGCAGACUGACUGAGCACGGCCAGCAUUCGUUGUCACCGGUUCUCAUUUGUCAACCAACCCCAGAGACCAUUCAUCGUGCAGCGUCUUGACUUGCAAUGGUUUUUACUGGGCAUCAGGAUGUGGCCACAAGUCGGUGUCACAGUUGGCAAAAACACUGAAAUCGUUCGAGCAAAUGGAGCUGGUUUGCAGGAAAGAGGAAUGAGAUUUGCAACCCAAAAGAAUUAAAAUUCGACAGGGAGAUGGAUAACUACAUCAUCAAGACGCUAUGCUGUCACGAUUGACAAAAGCACGCGCACACGUAGAAAUUGUAAAAUGGUAGUAGCUGUCAUUCAGUGAUCAAACACAAUGUCGUAUGCUACAAUUGUUCUAAUUUCUAAAAUGAUUGGUACAUACUAAUCAUAUAAACAUAAAGAGAUAACUAUAGACUCAUGUUAAAUGUUUAGGAGAUUGUAUCUUUGUUGUUCAGCACAAAUUCACGAUAUAUUGUAUCAUCAUUAUGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.27%
ME_num:
MEP:
88.21%
HE_num:
HEP:
7.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.53
Avg Expression:
5.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.13297809432786 | 2.44842073511225e-10 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.13311523558529 | 0.00990695206181929 |
3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.04365802784183 | 0.00246440759028434 |
4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.40947462466441 | 0.0329310861752299 |
5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.88967581666677 | 8.72219219303791e-07 |