OSA-LNC112936916


Function Link


Basic Info

Chr:

Chr11

Start:

4850420

End:

4854799

Strand:

-

Ref_name:

LOC112936916

Sequence
(XR_003239399.1):

GGCCCAACUAGUAUAGGCACCACGUGGGCCGCUUCCCCGUUCUGGGCUAACAAGUUUCAGGUUUCCCGCUUCAGCCCAAGCAGCCCAUCUUUCUUCCUUCCUCGGAGCGAAAUCCACCGCCGCCGCCGCCGCUCCAAACUCCGGCGACGACUCCACUACAGCCGUCGCCGCGUGCUGGCCGCCUCCUCCGUCUCCGGUGUAAAUCCGCCUCCCCGCGCCCCUCCGCGUCUUCCACCUCCGAAGAUUCAGAGAAAACCAAAGCUUCAGUUCGUAAUCAGAUGAAUGCAUAAAGGGAGGCCAAAUGAUCAAAGAAAGCUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAGCAAUGGCCCUCCUGCCUGACAAAAGUUAAUUAAGCAGUCCAUGUUCUUGAAAUUGAUGCACAACUGCACACGGUACAAGCACUAAAGAAGUAAUGAUACACCCUUUUACAGCAAAACAUAUCUGUGGAUCAUGCGUUGAUUACUAUGACAAUAAUUUGGCUGAAGAAUUGUGUAGUAGUACAAUGCAACCAACAACAGAUGAAUAUUCAUAUCGUUCAGCAAAGUGCAUCAUAUUCCGCUGUAAAACAAACCCAACAAGGCUUCCUGACCAAACAACAAUCCCAAAGGUGGUAGCGUACAUGACAAGGGCUUGUGAAAACUGAAAAGAAACUGCCUUAGAGAUGAACGAUGGAGAAGCCAGACUCAUACUACUCUGUUAAUCACCCUUUGAGAUGAACGAUGGAGAAGCCAGACUCAUACUGCCUUAGGAGCACUUCCAGUGAACAUUUGCUGGCCCAACUCAUACUACUCUGUUAAUCACCCUUUGAUAUGCAGUGAUGCACAUGUUUAGGAUAGAUGCAAAAGUUUGUUUCUAUCUGAUAAAAUGAAGCACAUGCUCUUCAGACACAGCACAAUCCGCGUUCAUGAAUUAUUUUAAUGUGGUGUUUGUGAUUCCUUUUAUGUUCGGAGAAGGCCUGAUUACAGAAAUGAAUGGAAAUGGCUGGUGCGUAUAGGACAAAGCCUCUUCUAAAAAAUCCUGCUACUACUUUUGUCAUCUACAGAAGACAAAGAACAUGUUUUCCAGUGAACUGUACGUUUUCUUAAAUUUGAGGCUGCUCUUCGCAAUCUAAACUACUUCCUUUUCUUGAUCUUUCCUUCCUAAACUUGGUAUUGCUUUGGUUCUAAUAUUUCUACUUGCUCACUCAUAAACUCUACCAAAUUAAUUCUUCUUGGCUAGGUACACCAACAAUGCUUCAAUAAAAAAUUGGGUUUAAUAUAGUGACUGGAUUGUGAUGAUUCAGCCAGAAUGAAUAAUGUAAAGAACUAAAGACUUCAAUAUUUGCAUAAAUAAAUUCAAGAAAAAAUUCAGUAACCAAAGCAACUUGAAAAUAACCACCUAUAAAAACAGCCACCUCCGUUUAUCAAUAGGACUAUGCAAAUCAACCUUAGGCUUACCUCAGCAUUUGUACAUUAAGGAUGAUACAAUAAUGGCCUUUAAUCCUUUUUCAUGUCACCUAGUACAUCUCGUAGUGACUUGAAGGUAUCUGCAACUAUUACUAAUACAUGGAUCAACUUUGUCACCUACACAGGUAUGGAUUUAAUGAUCAUCAAUCGUCACAGUGAAGAGUCUCCAACCUUGGCAUCAAUUUUUCCCCUGGUCCAGCCCAAUAGAAGGACAAGCUGAAUCCAAGUACAAAAGAAGCUGCUGCGACCCAUAUAGCUGAUCUGAAAUCAUCCUGGGAGCCUUUCAUACUGCCUGAAGUUCUAUUUUCUUCCGUGUCUAGUAUGAUGCCUGGAUUUCCAGUUACAUUGACCAUCACCCAUUUAGGUAGCUCAGGCAAUGGUCCGGAAAGGUUAUUGUCUGAAAGGAAUAGACACAUUAAUCUUUCCAGGUUUGCAACUGAGGAUGGCACCUGACCUGACAAGUAGUUUUUUGAAAGAUCAAGACGCUCCAACUUCAGAAAGGUUCCAAUGUUUGUGGGGAUAAUUCCAAUCAACUCAUUGUUCCCCAGAUCAAUGGUGAUCAGAGACUGCAGCAAGCUGAUCGACGAUGGAAUCACACCAUUGAGCUUGUUGCCAUGCAAACCUAAGUAGCAGAGCUUCAGUGACUGAGUAGAAUUUGUGAAAGGUAGUUCUCCAGUGAAUGAGUUAUGACUCAGGUUAAGUAUUUCCAGGGCUGACAUGUCAGAAAAUGAACUUGGGAUAUCUCCACUGAGAUUGUUCUUUUGGAGCUUCAAGACUACGAGCUGCUCAAGGUUGCCCAGCCCAAUAGGUAUAUUACCCUGCACCUGGUUUGAUGACAGAUCGAUGAGUGCCAAGUUCUUGCAUCUGCUGAGCUGCCAAGGUAUAUAUCCAACCAACUUAUUGCCAUCUAACAGAAGAUUAACCAAGUCAAUGGCAUUGCCUAUUGAUUCUGGGAUGCUUCCACCGAGCAAGUUUCGACCAAGCCGAAUACUAUGGAGGCUCCGAGAAACAUUCCCAGGGAUGAACCCUUCAAGCCUAUUUGCAGUGAGGUCAAUGGUCUCCAAAGUAUCAGGUGAGAGCAGUUCAGAGGGUAUAUCACCAUUGAGCAUGUUGUAACUCAAAUCCAACAUCCUAAUGUUCCUGGUAAUUCCUUGAGGAAUUGAGCCAACAAAAUUAUUCUGAUUACCUCCAAACCGAAACAGUGUGGUGACAUUCAGCAAGCUCCGUGGAAUUUUUCCUGUCAGGUUGUUUUCUGAAAGGACCAAAAUCCUGAGUUUUGGGAAGCUCAAGAAGCCAUCUGGGACAUCACCGUGUAGAUUAUUGCGGCAGAGAUCCAACAGAGUAAGAUUUCCAUACCUGAACAAACCCAUUGGAAUAUGAUCACUGAAAUUAUUACCCGAGAGCACGAGGUCUUCCAGAGAGGUAGCGAUGCUUGUAGGGACUGGGCCUUCAAAACCAUUGGAACUAAGGUUCAAGCUUCUCAGUUUUGGCAAAUCACUCAGCUGGGUACUUAUAUUGCCAUUUAAAGAGUUGGAGGACAAAUCAAGAACCUCGAGCUUGUGAAAACCAACGAAAUCACCAAGUUGACCAGACAGCAUAUUGCUACUGAGAUCCAGCACUUGCAAUUCAGCCUUCAUGGGGCACGGAGAGAGUUGGCUUGGCAAAUCGGUGAACGAGUUUCUCGAGAGGUUAAGAGAUCGCAAGGUAUGAAGAUUGCAUAUGGACGCAAGGAUGGUGGCAUUGGAGAGGCCACAUCCGGGGAGGGAUAGCCUAGUGACAAACGCAGAGGAUGCAACUGAAGAGCAAUGAACACCACUCCAUUGGCAUGGAUUUGAGCAGGUGUUCCAGUUCUUGGUACUGCCCACCGAGCUCAGAAUAUCUCGCAUGAUGUCCUCGUGUGCCUUGUUCAGUCGCGCUGGCGAUUGUUCGGUGGACGCUGCCAUGGGCACACCAAGAAGCAAGAACAGCAGCAGUAACAGUAAGCACAGGCUUCUAUCGGGAGCAUGGUGCCGACUCAUCACCUCCAUGGCUACUCUCAGCACUUUCUCCAUCUUUCCUCCUGCAACAUAUGAAGACAGAGAAGCACAAUGUUCAACACAAAAAAUGUUCAAACUUCAGACGUUGUGUUGAAGAACGGUGACACAUGUAGGAAGGGGUCCAGCAGACUGACUGAGCACGGCCAGCAUUCGUUGUCACCGGUUCUCAUUUGUCAACCAACCCCAGAGACCAUUCAUCGUGCAGCGUCUUGACUUGCAAUGGUUUUUACUGGGCAUCAGGAUGUGGCCACAAGUCGGUGUCACAGUUGGCAAAAACACUGAAAUCGUUCGAGCAAAUGGAGCUGGUUUGCAGGAAAGAGGAAUGAGAUUUGCAACCCAAAAGAAUUAAAAUUCGACAGGGAGAUGGAUAACUACAUCAUCAAGACGCUAUGCUGUCACGAUUGACAAAAGCACGCGCACACGUAGAAAUUGUAAAAUGGUAGUAGCUGUCAUUCAGUGAUCAAACACAAUGUCGUAUGCUACAAUUGUUCUAAUUUCUAAAAUGAUUGGUACAUACUAAUCAUAUAAACAUAAAGAGAUAACUAUAGACUCAUGUUAAAUGUUUAGGAGAUUGUAUCUUUGUUGUUCAGCACAAAUUCACGAUAUAUUGUAUCAUCAUUAUGUUA

Sequence
(XR_003239400.1):

UGGGCCCAACUAGUAUAGGCACCACGUGGGCCGCUUCCCCGUUCUGGGCUAACAAGUUUCAGGUUUCCCGCUUCAGCCCAAGCAGCCCAUCUUUCUUCCUUCCUCGGAGCGAAAUCCACCGCCGCCGCCGCCGCUCCAAACUCCGGCGACGACUCCACUACAGCCGUCGCCGCGUGCUGGCCGCCUCCUCCGUCUCCGGUGUAAAUCCGCCUCCCCGCGCCCCUCCGCGUCUUCCACCUCCGAAGAUUCAGAGAAAACCAAAGCUUCAGUUCGUAAUCAGAUGAAUGCAUAAAGGGAGGCCAAAUGAUCAAAGAAAGCUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAUUCUGAGAACAAGGUAAGUUGCAACCAGCAAUGGCCCUCCUGCCUGACAAAAGUUAAUUAAGCAGUCCAUGUUCUUGAAAUUGAUGCACAACUGCACACGGUACAAGCACUAAAGAAGUAAUGAUACACCCUUUUACAGCAAAACAUAUCUGUGGAUCAUGCGUUGAUUACUAUGACAAUAAUUUGGCUGAAGAAUUGUGUAGUAGUACAAUGCAACCAACAACAGAUGAAUAUUCAUAUCGUUCAGCAAAGUGCAUCAUAUUCCGCUGUAAAACAAACCCAACAAGGCUUCCUGACCAAACAACAAUCCCAAAGGUGGUAGCGUACAUGACAAGGGCUUGUGAAAACUGAAAAGAAACUGCCUUAGAGAUGAACGAUGGAGAAGCCAGACUCAUACUACUCUGUUAAUCACCCUUUGAGAUGAACGAUGGAGAAGCCAGACUCAUACUGCCUUAGGAGCACUUCCAGUGAACAUUUGCUGGCCCAACUCAUACUACUCUGUUAAUCACCCUUUGAUAUGCAGUGAUGCACAUGUUUAGGAUAGAUGCAAAAGUUUGUUUCUAUCUGAUAAAAUGAAGCACAUGCUCUUCAGACACAGCACAAUCCGCGUUCAUGAAUUAUUUUAAUGUGGUGUUUGUGAUUCCUUUUAUGUUCGGAGAAGGCCUGAUUACAGAAAUGAAUGGAAAUGGCUGGUGCGUAUAGGACAAAGCCUCUUCUAAAAAAUCCUGCUACUACUUUUGUCAUCUACAGAAGACAAAGAACAUGUUUUCCAGUGAACUGUAUGGAUUUAAUGAUCAUCAAUCGUCACAGUGAAGAGUCUCCAACCUUGGCAUCAAUUUUUCCCCUGGUCCAGCCCAAUAGAAGGACAAGCUGAAUCCAAGUACAAAAGAAGCUGCUGCGACCCAUAUAGCUGAUCUGAAAUCAUCCUGGGAGCCUUUCAUACUGCCUGAAGUUCUAUUUUCUUCCGUGUCUAGUAUGAUGCCUGGAUUUCCAGUUACAUUGACCAUCACCCAUUUAGGUAGCUCAGGCAAUGGUCCGGAAAGGUUAUUGUCUGAAAGGAAUAGACACAUUAAUCUUUCCAGGUUUGCAACUGAGGAUGGCACCUGACCUGACAAGUAGUUUUUUGAAAGAUCAAGACGCUCCAACUUCAGAAAGGUUCCAAUGUUUGUGGGGAUAAUUCCAAUCAACUCAUUGUUCCCCAGAUCAAUGGUGAUCAGAGACUGCAGCAAGCUGAUCGACGAUGGAAUCACACCAUUGAGCUUGUUGCCAUGCAAACCUAAGUAGCAGAGCUUCAGUGACUGAGUAGAAUUUGUGAAAGGUAGUUCUCCAGUGAAUGAGUUAUGACUCAGGUUAAGUAUUUCCAGGGCUGACAUGUCAGAAAAUGAACUUGGGAUAUCUCCACUGAGAUUGUUCUUUUGGAGCUUCAAGACUACGAGCUGCUCAAGGUUGCCCAGCCCAAUAGGUAUAUUACCCUGCACCUGGUUUGAUGACAGAUCGAUGAGUGCCAAGUUCUUGCAUCUGCUGAGCUGCCAAGGUAUAUAUCCAACCAACUUAUUGCCAUCUAACAGAAGAUUAACCAAGUCAAUGGCAUUGCCUAUUGAUUCUGGGAUGCUUCCACCGAGCAAGUUUCGACCAAGCCGAAUACUAUGGAGGCUCCGAGAAACAUUCCCAGGGAUGAACCCUUCAAGCCUAUUUGCAGUGAGGUCAAUGGUCUCCAAAGUAUCAGGUGAGAGCAGUUCAGAGGGUAUAUCACCAUUGAGCAUGUUGUAACUCAAAUCCAACAUCCUAAUGUUCCUGGUAAUUCCUUGAGGAAUUGAGCCAACAAAAUUAUUCUGAUUACCUCCAAACCGAAACAGUGUGGUGACAUUCAGCAAGCUCCGUGGAAUUUUUCCUGUCAGGUUGUUUUCUGAAAGGACCAAAAUCCUGAGUUUUGGGAAGCUCAAGAAGCCAUCUGGGACAUCACCGUGUAGAUUAUUGCGGCAGAGAUCCAACAGAGUAAGAUUUCCAUACCUGAACAAACCCAUUGGAAUAUGAUCACUGAAAUUAUUACCCGAGAGCACGAGGUCUUCCAGAGAGGUAGCGAUGCUUGUAGGGACUGGGCCUUCAAAACCAUUGGAACUAAGGUUCAAGCUUCUCAGUUUUGGCAAAUCACUCAGCUGGGUACUUAUAUUGCCAUUUAAAGAGUUGGAGGACAAAUCAAGAACCUCGAGCUUGUGAAAACCAACGAAAUCACCAAGUUGACCAGACAGCAUAUUGCUACUGAGAUCCAGCACUUGCAAUUCAGCCUUCAUGGGGCACGGAGAGAGUUGGCUUGGCAAAUCGGUGAACGAGUUUCUCGAGAGGUUAAGAGAUCGCAAGGUAUGAAGAUUGCAUAUGGACGCAAGGAUGGUGGCAUUGGAGAGGCCACAUCCGGGGAGGGAUAGCCUAGUGACAAACGCAGAGGAUGCAACUGAAGAGCAAUGAACACCACUCCAUUGGCAUGGAUUUGAGCAGGUGUUCCAGUUCUUGGUACUGCCCACCGAGCUCAGAAUAUCUCGCAUGAUGUCCUCGUGUGCCUUGUUCAGUCGCGCUGGCGAUUGUUCGGUGGACGCUGCCAUGGGCACACCAAGAAGCAAGAACAGCAGCAGUAACAGUAAGCACAGGCUUCUAUCGGGAGCAUGGUGCCGACUCAUCACCUCCAUGGCUACUCUCAGCACUUUCUCCAUCUUUCCUCCUGCAACAUAUGAAGACAGAGAAGCACAAUGUUCAACACAAAAAAUGUUCAAACUUCAGACGUUGUGUUGAAGAACGGUGACACAUGUAGGAAGGGGUCCAGCAGACUGACUGAGCACGGCCAGCAUUCGUUGUCACCGGUUCUCAUUUGUCAACCAACCCCAGAGACCAUUCAUCGUGCAGCGUCUUGACUUGCAAUGGUUUUUACUGGGCAUCAGGAUGUGGCCACAAGUCGGUGUCACAGUUGGCAAAAACACUGAAAUCGUUCGAGCAAAUGGAGCUGGUUUGCAGGAAAGAGGAAUGAGAUUUGCAACCCAAAAGAAUUAAAAUUCGACAGGGAGAUGGAUAACUACAUCAUCAAGACGCUAUGCUGUCACGAUUGACAAAAGCACGCGCACACGUAGAAAUUGUAAAAUGGUAGUAGCUGUCAUUCAGUGAUCAAACACAAUGUCGUAUGCUACAAUUGUUCUAAUUUCUAAAAUGAUUGGUACAUACUAAUCAUAUAAACAUAAAGAGAUAACUAUAGACUCAUGUUAAAUGUUUAGGAGAUUGUAUCUUUGUUGUUCAGCACAAAUUCACGAUAUAUUGUAUCAUCAUUAUGUUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

21

LEP:

4.27%

ME_num:

434

MEP:

88.21%

HE_num:

36

HEP:

7.32%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.53

Avg Expression:

5.43

Tip: OSA-LNC112936916 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.132978094327862.44842073511225e-10
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.133115235585290.00990695206181929
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day1.043658027841830.00246440759028434
4Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated1.409474624664410.0329310861752299
5Nipponbare // panicle // AM--/--Nipponbare // panicle // PM1.889675816666778.72219219303791e-07