Chr:
Chr11
Start:
7262845
End:
7263686
Strand:
+
Ref_name:
LOC112936913
Sequence
(XR_003239389.1):
UACCUCGUCGGGCUGUACGUCGCCGCCGUCGCCACCGCCGACGCGGCGUCCUCCGGCGCCGGCAGCAGCGGCGGCAGCUGCACCGCCGCCGCCCCUCGCUGCUCCCGCAGCUUCACGCCGGCGUCCAGGAUCGCCUCCAGAUUAGAUUAUGCGUCGGCGAGGAGUGGUGCAGGGGACGGAGGAGGAAGAAAGGCUCCCGCCAUUAUAUCCACCUCGAGCAGAGGCAGAGCUAGCACCAUAUAUAUUUUUUUUCUAAAUUAUCUCUUUUUCCUGAAUUUAUUUAUCUUUUCAAAUUUUUAUUCUCCUUGUUUUUCUUUACAAAUUUUAAUUAUAUUGUAAGAGGAAAUAUCUGUAUUAUUGCUCUGUUUUUUAUUUUUUUCAGAGUCUAUUGGAUUCUACGGCGGUUAUGGUGUUGGCUAUCUAAUCUAUCUCCUUGGAGGGAUACGGGAGGAGAGGAAUAAAGCGCGGCAAAAAAAGAGAAGAAAAGGGAGAAUAUAUAUAUAUAUAUAUUUUUUCACAUUUGUGCGUGUGCGUAGCUAGUAUACGUGGUAGCUACAGCAUAUGCUGUGAUAUGCCCGUGUGUAGUAGUGGAACAGUACUAGAAGGCUACUAGUGGGCCGUCGGCCAAUGGAUGGGCCGGCGAGGUGCGUGCAUGGCAUUGGCACACGUAUCAACCAAGGACAUGAUGGGAGUAGAAUUGCAUAUGCCCCUAGCAUAUGCCAUCUUUGAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.86%
ME_num:
MEP:
42.48%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.83
Avg Expression:
2.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.72809033554623 | 0.037564985550651 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.94008051979173 | 0.00857813420850807 |
| 3 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 2.10533169323423 | 0.0112286126429877 |
| 4 | 9311 // leaf // control--/--9311 // leaf // salt | 1.37259447749754 | 0.014494972429927 |
| 5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 2.97419798329112 | 0.00241836776089978 |
| 6 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.88418883594665 | 0.000104443977383541 |