Chr:
Chr11
Start:
27712152
End:
27715041
Strand:
-
Ref_name:
LOC112936907
Sequence
(XR_003239386.1):
UGCAUCUAUUUUUGGAACCACAGAUUUCGCUCUUAGAAGGCCAUAUUCCGUUGAUUCAAAACUUUUUUUUAUGUGCAGCCUGCAUUUAUUUUUGGAAGCAUAAACGAAAGGAUCACAUAUGUAUGUCUGUUUGCUAAUUAAUACCUUUUCCUGCAAAUACACAUACACCACUUGGAUGUAGAUACCCAUUCUGCCUUGCUUUACAUGUUAAUUAACUUGAUUGGGUAAAUGUUUACUGCAUUGAUCGACCGGUAUCUCAAAGUACAAUCAGUAAGUGACUGAAGCUAAUUCAUUAGCUUUUUAUGUCUAUAUAUGAUCAUAAAAAUAUCUGUAGAGUGCAUCAGACAAGCAAAAAGUAUAUGGCAAGUGAUAGCACAUUUCUUAGGGAAGGGAUUUAUGAGUUCAAUGUCAAAAUCCUCUCUAUCAGUUGCCUCGCAUUUUUAACUUACCUAGGUUGCUUCCCUAUUUUUUGCUACAUAAGAACUAUAUGUAUGUCACCACAUCAGAGUUAUUUAUAUUCACAUGUUAUAUUCUAAAUCCAUAUGUUGUUGAGAUGUGUUCUUUAAUUGAUCUCUUCAUCUCUAUGCAGAGUAUCCUAUCAUAACAUUAACAAUGUUAGAUCAUACUUUUAGUGGGUGUUGCAUGAAGUUAUUAUUAUCAAAGCUGUUGAAGGUCGAAAAAGACAUGGAUGGAUUGGAUCCAUCACGGAAAGCUGAUUUCCUGUUAAUAUCUGAGACGAACGUAAAUUUCUUUUGAAGGUACAUUUCAAUUUAGUUUGUGCAUCAACUGUUCAAUGGGAAUGCUUUGCUAGACAUAUCCUAACCGCUACGAUGCAAAGGUAAAGCAAUAUCAUGAGUCCAUUUUUUUUUAUAUUUUGUCUUUCAGUUGGUUUGCUUUUACAUGUCUGUGCUCAGAUAGAUUAUUUCACUGUUUAGUUCACCAGUCUAUUUUACACAUGUUUUUUUCAUUAUUUGUGAAAGCACACUUUUAAAUCCUAAAAGUUGUGCAGUCGAUCUGUUUCGUCAAACUGUAGUGUAGCCUGCUGCCACUGUGCUUUUACAAGCUCUUUGUUUCCGCGUUGUAUAUUUUGCCGGCUACUUAAAAGGAACAGGGAAGAAAAAAAUGGAACCUAACCUGAAGAAGUAUAUAUGCAUUGUAGAACUAUAAGGCUUAUGUUAUUGCAUCCAUACUUUGGUUAAGUGAUUAUGCAUGCUUUCGCUCAUAAACUUUGCCACGUGGCCACAUGGUAGCAGCACUUUGUACUACUCCACUCCAAAAAAGAUAGAACUUUUGGUAGAAAAAUUGGUUGCAUGUGUUUAGAAUUGUGAUGCCAAGCGAAAAUAUUAUCUCUCUAUAUAAGUGGUUGAUACUAUACUGUUUUAGCUGUACUAACAUUACUAUUAAAACUUUCUACUACCUUUGUCCCAAAAUGUAAAAACUUCUGGCCCUAUAUCUUGAAAGGUAUGUUUAGGUACACUGCUCAAAAUUGCGAUAUAUUUUGGGACGGAGGUAGUAUACUUUUUUUUUAGGUUUACCGAUGUCACUAACCGCACGUAACGGAGGAUUGUUGUUGACUAGGGCACUUGCAUGUUGCACUUAAAAAACAUCAUUUUCUAUCUGUUCAUUUUAGCUUUGCAUAUGUUUAAUAUGGACCACCAGUAGGCAUUUAGGUCUUAUGUUUUUAGCAUCCAAUAGUCCUAUGUGAUUCUAGCGUAUAGAGAAAAAAAGGGGUAGCAUUGAAACCUCUGUAAACUCAUUGUAAUUGACAUGUAAUUUGCCCCUUUUUUCUAUUUAUUCAAACUUCCGAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.15%
ME_num:
MEP:
32.93%
HE_num:
HEP:
7.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.93
Avg Expression:
8.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.48362323922719 | 7.47171038996306e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.40284703998596 | 5.6521827200974e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.54364875831947 | 3.06356269033441e-09 |