OSA-LNC112936888


Function Link


Basic Info

Chr:

Chr11

Start:

5273129

End:

5276230

Strand:

-

Ref_name:

LOC112936888

Sequence
(XR_003239322.1):

GCCUUGUUCGGUUACUAGAGAUUUAAUCCCCAAGGGGAAUCAAUCCAGGAGGGAUUGAGUGAAUCCCUCUCAUGUCACUCAAUCCCUGUUGGGGAUGAAUCCCUCCCUACCCACUAAUCCCCCUCUCAAAUCCAUGUGUUCGGUUUGGUCACGAUCAACAAUAGCAGGAUUGGUGCUUUCCUGCUUCAACGCUGCUAUUGAGUUGAUGUUCAGCUUGGCAGUUUAUAUGCAUCAACUUCAGAGCAUCAAACGGAGGAAGCAUCAAACAUAGCAACGUAAUUUGCUAAUAUCUUAUCGUACAAAUAAAAUAUACUCAGUGGAGUAAUUACUGUAAUCUCCAAUGAACAUCAAAUGUCACUUUUGCUUUUCAGUCGAAACAUAGCAUUAUCUAAUAUAAGUUAAGAAUAUCGAUCAGUCCUAGCUUCUAAAGUCUAUGCUUAAUAAAUAUUUUAGACAUAUUGAAAGAAGUGCAGUGCAGAUGCAUAAUUGAUCCUUCAGCGCCCCUGCAACAAAAAGAUCCUUACAGCCUUCCAGUUCCAUAAUUUACACCAUCAUCAGCAUCUUCUCCAACUGUCAUCACAGGAGAAUUACGAAAAAUUAUGUAAGACCAUAAUAGAGCUGAUUGAGGAUAUGUAUAUGGUAAUUUAAAAUUCCAGCAAUUGACAACUACUUGUGGGUAACCCCAAAGAGAGGUAGAUUAUAACAACUAAAAAUUAAGCAUUAUCUAAUAUAGUUUUGAAUGGAAGACCAUACAAACUACUUGCAAUUUUCUGAAGUUUAACCAUGUUCAGAACAAUGAUCCAGAAAUUAAGCAACAUGCUCCUAUGCCCCCAUGCAUCCAUAUGGUGACAUUGGUAUACACAAAUACCAUUAACUUUAAUCUACAGUACUUCGAGGAACUUAUGCAAGCAUUGCCUUUUGCCAUGCCACACAAACAAAAAAUGAUUUUUUUUCUUCUAAAAAUAGCAUAUAAGCUAGUUGUAAAUGAUCAUCUUCAUCAUGCAUGAUUAAUAUUCAUAAUAACACUUUAGACAGAAACAAAUUGACAUAGGAAUUAUUAUAUUCACAUCACAAAAAUUAAUAUCUUGUCAACUUUCAGCAUUCUUAAACAUGUUGCACAUGACAUGAAGUAUAAUCUUAUGAAAACAUGUUGAACUGAACUAAUGCAACAAUCCAUUUCUUGUUGUACAUACAUAAAAUAAAACCAGUGAACAUUAUAAUGCACAAAGUUUCAGACUCAAGUGUAUAACAGAUAUAUGGUGAAUGUAGAAAAGGAUGAACACCUCAACCUUCUUCUAGUUUCUCUCUCUAGAAAUUAGAACGUGUGGAAGCACAAUUCAGCCUUGAAAACACUAAACACUUGCUUGCUAGCUACUGGUAAUAGAGUGUGACUCUGAAAUCUGAACUUACUUUGUAGACAGAUCCAAAACCACCUUUUCCAAGCAAACUUUCACCUGAGAAAUUAUUAGUUGCAUCUUUUAUGUUAGAGAAAUCAUACAGUUUAAAGCCCAAGUUGCCCUCUUCUAACCUCCAGAGAGUUAUUAUAUUCUGCAUUGCCAUGGACAGCCUUCGCAGCUCCGAUCUUACUCACCACGAGUAAGAACUCACAGGGAAAUGCAGCAAUCAAGAACUCACCACGCCCAAAUCAAGAACUAAUGAUAUGGUUUAGGACGUGCGGCGGCGGCGGUGGCGAAUCAAGAACUCAUCCCCACCCAACCAAGAAAAAAAGCUCAUUCCCCAUCUGAUCAAGAACUCACUAAUCCUCACCCACAUCAAGAACUCACCAGAUCGAGCAGAAUACGAGGAGGACGACGACGAAUCGCGGCGACGACGGGAAAGGGAGAAAAGAAGAAAACCCUAACCCUAUCUUUGGAAGAGGAGGGGAGAGGGGAAAAGGCUGCGUGCUCACCGGAGAGAAGAUGGCGGCCGGAGGAGAGCGCCGUGUCGUCGCCGUCGCCUCCGCGUCGCGCCGCCCCCACCGUUGCGCCACCUCGAAUCGCCUCCGCGUCGUGCUGCCGCUACGCGUGUUGCACGUCGCCUCCUGGCUCCCGUCGUGAGGAAAUUUUCCACGCCACACGAGAAGCUGAUUUUUUCCCGGGCCUAGGUGAGGGGGAAAGGCCGGGAUAGGCCGGGGUAAAACCCAGACUGGGCUUAACCGAACACACAAUUUCGGAUGGGCCGGGAUUGUUUCCUCGCCGGGGUGAUCCACGGGGAUCGGUCCCCGAUCCCGGCCGGGAACGGCCCAACCGAACAAGGCCUAAAAGUGGUGGAAGUAUUUCUUCAUGAUUUCUCCAUGUAUGAAGGACUUGUACGAAAAAUAUGAAGGAGUUUGCGUGUCCUGCAUGCAUGGCCUCACCGCCCAUACCAGUUGAUAAAACCGGACACGAGGGGACCUCUUGUUUUAUUCAAACAGGGCAAUGACCGUUGGAAUAGAGUGCUGCCAGUCUCCCUUGCCCAAUUGAGAAGCCCUGCUCCGAAUGGAGCACCGUGUCAGUAUCCCAAGGAGCAAAAAAAAUUUUGAAAAAACGGAGAAAAAGGAGAUGGUUAGGGGAGUUAUUGAUUGAUGAUGAUCCAGACGAAUUGAUUGGCUCUUUUGAUGCAAACGUUGAUGAUAAUAUGCAUGAAGAUUUUUCAACCAUGGUUGCUCCUCCAAUCCAUGGAGAAUAUACAAGUCUUUUGUUUGGACUUGAUCAAGAUGCCAUGGCUGCUCGGAAGUUAUAUUUUGAUUAAAUAUGAAAUUAUGGAACAUGUAAGGAGUAGUCGUGCUUUGGUAAUUAUUUAUUGACAUGAGACUGUAGUUUUGCUGUGCCAGCAGCCUAGACCUUCUUUGUCUCUGUAUCUAGAUACCCUUUUAGCAGCCAGCUGAGAGCCUUGGUGCUCCUCGUGAUUGGUUUGAAAGCUGGAAUUCUGGAAACCCCGUCAGUUUGUAUUUUCCUUUUCCCUUUUGUUUCUUUAAAUACUGUAUGAACUCUUAUGCUUUCAAGUAAAAGCUGGACGGGGUAACCGUCUUUUGUCUAAAGAAAA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

427

LEP:

86.79%

ME_num:

64

MEP:

13.01%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.90

Avg Expression:

1.13

Tip: OSA-LNC112936888 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.959052778323210.0127605557433133
2Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-3.441267069102250.0163627574757074
3Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-3.943241544274610.00679174226896548