Chr:
Chr11
Start:
5273129
End:
5276230
Strand:
-
Ref_name:
LOC112936888
Sequence
(XR_003239322.1):
GCCUUGUUCGGUUACUAGAGAUUUAAUCCCCAAGGGGAAUCAAUCCAGGAGGGAUUGAGUGAAUCCCUCUCAUGUCACUCAAUCCCUGUUGGGGAUGAAUCCCUCCCUACCCACUAAUCCCCCUCUCAAAUCCAUGUGUUCGGUUUGGUCACGAUCAACAAUAGCAGGAUUGGUGCUUUCCUGCUUCAACGCUGCUAUUGAGUUGAUGUUCAGCUUGGCAGUUUAUAUGCAUCAACUUCAGAGCAUCAAACGGAGGAAGCAUCAAACAUAGCAACGUAAUUUGCUAAUAUCUUAUCGUACAAAUAAAAUAUACUCAGUGGAGUAAUUACUGUAAUCUCCAAUGAACAUCAAAUGUCACUUUUGCUUUUCAGUCGAAACAUAGCAUUAUCUAAUAUAAGUUAAGAAUAUCGAUCAGUCCUAGCUUCUAAAGUCUAUGCUUAAUAAAUAUUUUAGACAUAUUGAAAGAAGUGCAGUGCAGAUGCAUAAUUGAUCCUUCAGCGCCCCUGCAACAAAAAGAUCCUUACAGCCUUCCAGUUCCAUAAUUUACACCAUCAUCAGCAUCUUCUCCAACUGUCAUCACAGGAGAAUUACGAAAAAUUAUGUAAGACCAUAAUAGAGCUGAUUGAGGAUAUGUAUAUGGUAAUUUAAAAUUCCAGCAAUUGACAACUACUUGUGGGUAACCCCAAAGAGAGGUAGAUUAUAACAACUAAAAAUUAAGCAUUAUCUAAUAUAGUUUUGAAUGGAAGACCAUACAAACUACUUGCAAUUUUCUGAAGUUUAACCAUGUUCAGAACAAUGAUCCAGAAAUUAAGCAACAUGCUCCUAUGCCCCCAUGCAUCCAUAUGGUGACAUUGGUAUACACAAAUACCAUUAACUUUAAUCUACAGUACUUCGAGGAACUUAUGCAAGCAUUGCCUUUUGCCAUGCCACACAAACAAAAAAUGAUUUUUUUUCUUCUAAAAAUAGCAUAUAAGCUAGUUGUAAAUGAUCAUCUUCAUCAUGCAUGAUUAAUAUUCAUAAUAACACUUUAGACAGAAACAAAUUGACAUAGGAAUUAUUAUAUUCACAUCACAAAAAUUAAUAUCUUGUCAACUUUCAGCAUUCUUAAACAUGUUGCACAUGACAUGAAGUAUAAUCUUAUGAAAACAUGUUGAACUGAACUAAUGCAACAAUCCAUUUCUUGUUGUACAUACAUAAAAUAAAACCAGUGAACAUUAUAAUGCACAAAGUUUCAGACUCAAGUGUAUAACAGAUAUAUGGUGAAUGUAGAAAAGGAUGAACACCUCAACCUUCUUCUAGUUUCUCUCUCUAGAAAUUAGAACGUGUGGAAGCACAAUUCAGCCUUGAAAACACUAAACACUUGCUUGCUAGCUACUGGUAAUAGAGUGUGACUCUGAAAUCUGAACUUACUUUGUAGACAGAUCCAAAACCACCUUUUCCAAGCAAACUUUCACCUGAGAAAUUAUUAGUUGCAUCUUUUAUGUUAGAGAAAUCAUACAGUUUAAAGCCCAAGUUGCCCUCUUCUAACCUCCAGAGAGUUAUUAUAUUCUGCAUUGCCAUGGACAGCCUUCGCAGCUCCGAUCUUACUCACCACGAGUAAGAACUCACAGGGAAAUGCAGCAAUCAAGAACUCACCACGCCCAAAUCAAGAACUAAUGAUAUGGUUUAGGACGUGCGGCGGCGGCGGUGGCGAAUCAAGAACUCAUCCCCACCCAACCAAGAAAAAAAGCUCAUUCCCCAUCUGAUCAAGAACUCACUAAUCCUCACCCACAUCAAGAACUCACCAGAUCGAGCAGAAUACGAGGAGGACGACGACGAAUCGCGGCGACGACGGGAAAGGGAGAAAAGAAGAAAACCCUAACCCUAUCUUUGGAAGAGGAGGGGAGAGGGGAAAAGGCUGCGUGCUCACCGGAGAGAAGAUGGCGGCCGGAGGAGAGCGCCGUGUCGUCGCCGUCGCCUCCGCGUCGCGCCGCCCCCACCGUUGCGCCACCUCGAAUCGCCUCCGCGUCGUGCUGCCGCUACGCGUGUUGCACGUCGCCUCCUGGCUCCCGUCGUGAGGAAAUUUUCCACGCCACACGAGAAGCUGAUUUUUUCCCGGGCCUAGGUGAGGGGGAAAGGCCGGGAUAGGCCGGGGUAAAACCCAGACUGGGCUUAACCGAACACACAAUUUCGGAUGGGCCGGGAUUGUUUCCUCGCCGGGGUGAUCCACGGGGAUCGGUCCCCGAUCCCGGCCGGGAACGGCCCAACCGAACAAGGCCUAAAAGUGGUGGAAGUAUUUCUUCAUGAUUUCUCCAUGUAUGAAGGACUUGUACGAAAAAUAUGAAGGAGUUUGCGUGUCCUGCAUGCAUGGCCUCACCGCCCAUACCAGUUGAUAAAACCGGACACGAGGGGACCUCUUGUUUUAUUCAAACAGGGCAAUGACCGUUGGAAUAGAGUGCUGCCAGUCUCCCUUGCCCAAUUGAGAAGCCCUGCUCCGAAUGGAGCACCGUGUCAGUAUCCCAAGGAGCAAAAAAAAUUUUGAAAAAACGGAGAAAAAGGAGAUGGUUAGGGGAGUUAUUGAUUGAUGAUGAUCCAGACGAAUUGAUUGGCUCUUUUGAUGCAAACGUUGAUGAUAAUAUGCAUGAAGAUUUUUCAACCAUGGUUGCUCCUCCAAUCCAUGGAGAAUAUACAAGUCUUUUGUUUGGACUUGAUCAAGAUGCCAUGGCUGCUCGGAAGUUAUAUUUUGAUUAAAUAUGAAAUUAUGGAACAUGUAAGGAGUAGUCGUGCUUUGGUAAUUAUUUAUUGACAUGAGACUGUAGUUUUGCUGUGCCAGCAGCCUAGACCUUCUUUGUCUCUGUAUCUAGAUACCCUUUUAGCAGCCAGCUGAGAGCCUUGGUGCUCCUCGUGAUUGGUUUGAAAGCUGGAAUUCUGGAAACCCCGUCAGUUUGUAUUUUCCUUUUCCCUUUUGUUUCUUUAAAUACUGUAUGAACUCUUAUGCUUUCAAGUAAAAGCUGGACGGGGUAACCGUCUUUUGUCUAAAGAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
86.79%
ME_num:
MEP:
13.01%
HE_num:
HEP:
0.0%
Type:
MCR ()
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
1.13
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.95905277832321 | 0.0127605557433133 |
2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -3.44126706910225 | 0.0163627574757074 |
3 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.94324154427461 | 0.00679174226896548 |