Chr:
Chr11
Start:
20720713
End:
20721971
Strand:
-
Ref_name:
LOC112936833
Sequence
(XR_003239238.1):
UCCUGACAAAAAGAUACAGCAUUGGUUCACGACAUUUGAAUUAUAUGAUGGACAAGGGUCUCAGAAUGAAGUGAGCACAGAAAGCAUCUCAUUGAGUUGUUCUAAAGGACGAAAUAUUUAUAAGCAUGAGUGUUGGACCGGUCCCCUUUCCCUGUAUGUGCAUUUCCAAAAUAUCCAAAAGUAAACAUUUUUUAUGUUAACUUAUAUAUAAAGUAAGGUUUAUAGUUAAUUUGUUUUCUUUGAAUUGCAAUCAACACAGCACACACCAUGGUCUAUCAGUGAUUUUUCGGGUCAUAUAUUGGAUGCCUGACUCCUAUAAAUCUUAGUGUUUAAGUUCAAUGCUAAGUUUUUUUUUCCUUUCGCAUUCAUGAACGCUGAAUCUUCAUUUCUUAUGGCAACAUCAAACUCAGCAGUACCAAUACCAUGGUGCCUUUCUCAAUCACGAGAUCGAAGCUCUCACGAUCGAACGGCAGAUCAAGCAUGUCCGCCACCACAACCUCCACACCUGCAAGAAGCAGAAGGCCAACAUUUCACCCCCAAAAUCCCAAAUGGCAGUGCCAUUGUGAAAAAUUUACCCUCGGUGCCCUGCUCCGCGAGGCGGUCACGCAUCCGCUGGACGGCGACGGGCGAGAGGUCAACGCAGGUGAUGCCGCCGGCGACGCCCUCCCGCAGCAGCUCCUCCCCGAGCCGCGAGUUGCCACACCCAACCUCAAGAACCUAGCGCAACACGAAUUCGAGAUGAUUUCAUUUCACCCCCAGACUUCAAAUUUCAAGAACCCACAAAAAACAAAUUCCCCCCACCCAAAGAUGAUAUCAGGAGGGAUUCGUGGGGGGAAGAGAGGAGGCGAGACGAACCGAGAUGGAAGGGGAGAGGAGCGGGGCGAGGAGGUGGCGGAAGUGGGAGAAAUCCUUGAACCACUCAUAGUGCUCCUCCUUCCCGAACCGCUCGUCCCUGCGCGCGCGCACACAGGCCAGCCAUCACAUCAGCGAGACCCAUCCGCUGCCGCGCCGGCGAGCCGCGAGCAGAGAAGAGAAGGAAAAAGAAAAAAGGGGAACCAAACCAGUAGGAGGGGUCGAGGUAGGCGGAGGCGGUGCGCGGCGCGACGUCGUCGGCCAUCGCCGCCGGAGUGAGCAAUGAAGCAGGUGGGUGGCGCCGCCGCCGCAGCCGGGUUGCUUUGUGGAGCGCUGACGCGGGUGCAGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
39.43%
ME_num:
MEP:
42.28%
HE_num:
HEP:
18.09%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.93
Avg Expression:
20.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 3.58932456627245 | 7.39287903649752e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.80201442289511 | 0.0363158231058631 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.31726666495129 | 1.87678497064365e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.1359487254289 | 0.00182935932920327 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.63155403119759 | 0.000246670319469319 |
| 6 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.02844432017842 | 1.4999776802319e-05 |
| 7 | 9311 // leaf // control--/--9311 // leaf // salt | -2.23946931608085 | 0.0290554506624079 |
| 8 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.32318316876979 | 4.26763174872663e-09 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.43103921751608 | 4.27268954652074e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.30706409975975 | 8.15075640265917e-08 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.54481280306864 | 2.44672605260114e-11 |