Chr:
Chr11
Start:
20617015
End:
20618762
Strand:
-
Ref_name:
LOC112936821
Sequence
(XR_003239218.1):
GGAUAGUUAGGUAAUUUCACGUGUAUCUUCUUUAUCUGUCUCCUGUUUUUUCUCUCUCCAAAAGAUGCUGCAUCGAUCGAUGGAUCUUGCCAGUGAUGGCUCUUACCAGAGUGGAGGCAGUGGGGACCGACAAGCCUCCUUACAUCACUUUCCCAAGCUCACCGGUGACAUAUGCCUUCCGUGCGGCCCUUCCCCUAAGGGCAUCACAAAUGUGAGCCACUCCUAGGGUGCCCCUACUAACUGAAGGACUCUAGAGGUACUCACCUCUACCAUGCAGGUCAUAUAUGGGUAGCCCAAUGAGUAUCACAACCCAAAAAAGCCCGUUUCUCUCAUCUUCCUCUCUUUCCUAUUCUACCCCUCUCUUCCCUCCCCCUCUCUCUCUCUCUUUUUCCGUCCAAAGUCCGAACCGUCCUUCCACUCGCCGCCUCCUUCCUUCUCUCUCACCGCCGCUCCCACCGCCGCCUGCUUCCCUCUCUCUCGCCGUCGCCUGCUUCCCUCUCUCUCGUCGCCGCCUGCUGCUUCCGCUCGCCUCCCUCUCUCUCCCGCCAUCGCCACCGUCUCCCGCCGCCGCCCCCGAAUCGAGCGCACGGGGCGGAGGCGGCAGUCGUCGUCGUCUGGUGGCCGGAGCGGCAGAUCCGGGGCGGAGGCGACAGUUGUACUCGUCGUCGUCGUCGUCCGGUGGCCGGUCACCGCUCUCUCCCUCUCUCUCUCUCUCUCCCGUGGAAGGUGGCGGCGAAGACCCCGGAGGCGGCAGAUCCGGCGCCACCGUGGCCGGAUCUGGCCCUCCGGCGGAUGGAGCAGCGUCGGCCCCGCCGCAUGAAGACGGUGGCGGCGCCGGCGGUAGCUGCAUCGACGAUGGCGCCGCGCUGGCCGCCGCCACCUCCCUCCUCGCCCUCCCUUCUUCUCUCCGGCGGCGAGCGGCGCCUCCGCCUUGCCCUUGACGCAUGGGUCGGUGACAGAGGGGAGAGGGGUGGAAGAGGAAAUCAAAGAUCGGGUGCGUCGCCUCAAGAACCUCUACCUACGCAGUGGGCUGCUUCGCCCAGUCCCCCUGCCAAAAGUGAGCGAGGGACGCGUUCCCCAGCUGAGGGACGCGUUCCAUCGCGAGGGGGCGAUGCGGAUGGAAAAGCUAACGGACGGAGCUAGGGGCACGGGUCAAAGGCGUUGCUGGCCCCCAACGCGCUGUCGUCCAACACCGCACCUCCACACCGUGCGACGUCCCCGGCACCGACCACACCUCCCUCGGCACCAACCACCCCUCCUACUCCUCGUCUUCUCUACCGUCGCGCAACAGCCUCCGACGCAGGCGCCGUCGGUGCCCAUCACGCCGCCGUCCAACGCCCCGCCGCCAGCGCCCCCGGCACCGACCACGCCUCCCUUGGCACCACCGGUGCCGACCACCUGAGCACAGUGGUGGAGACACAGUCUGAGAGAAUGAGCAUCACGAGCUGGACUUAGCUUGUGAGGUUUUCGAUCCUACCCUCCAAGAAUGAACGGCGGGAUUUAGAUUGGUAUAAUAUGCUGGACCGGAACAAUGCUCUAAUCCUAAUCCUAAUCAAUCCCUUAUAAUUGUUUCCUUCUAAUUUCCUAUUCGAGAAAGCGACAGAAGAUAUAGUAGUACCGGUACUCACGGUCAGCUCACGCUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.63%
ME_num:
MEP:
37.6%
HE_num:
HEP:
10.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.88
Avg Expression:
16.53
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.98509130299586 | 0.0094625217715542 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -7.92749623278498 | 3.02603818901089e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.0814961859121 | 0.00407270299409323 |
| 4 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.64043057470471 | 0.000136970505405337 |
| 5 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.28633981436685 | 0.00423585621155192 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.87176767118187 | 0.00857760258789164 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.12456866049457 | 0.023847946671202 |