Chr:
Chr11
Start:
9389106
End:
9391811
Strand:
+
Ref_name:
LOC112936815
Sequence
(XR_003239206.1):
CUGAGUCAUCCUCUUAUCCGAUCGCCCUUGCUUAUCAGUUCGCUUGCUUCGUGAGGAAGAAGCUUAGCCGCUAAGCCGUGGCUGCAUCUCUCCCUCUCUCUCGCGUUCCAUCGCCACGCCGCAUGACGUCGCCCGUGUCACUUCGCUCUGAGAGCCCUACCCUUGAUUCCCGGCCGUAGUCAUCGUCCACCCAUGUUCCGCCGCCAUAUCCGCUCUCCGCGCGUCACCUCGUGUCGCGUCGCCGUCGUUUUAGCCGUCGAAUCGCCACCAGUGCGUGACGCCACUCCGUCGCGUCGCCGUCACCUCCGCCCAGGAAUCCGGCCGAGCAAGCUAGCCGGCUACCCCCGGUUUCCCGCGCCUAGACUUCCAGCUCGUCACCGCAUCGCGCCAACCCGCCCUCGCCUAUUAAAGGAGGCAAAACCUGAGCCCCAUCUUCACCAUUGCCAUCACCAUCUCCAUCUCUCUCUCCUCUCCUAUUCUCUCUCGUUCUCCUCUCUGUGCCGCCGAUGGAGCUCUGCCGAAGUUCGCCGCCGCCUCCCCCGGCCGCCGGCUGCGGAGCCGCGCCUCGCCGCCGCGGCACCUUGCCGCCCUGAGCCGAGCAGGCGAGAGGAAGGAGGAAGAAGACCUCUAGCCGUUGACAGCCGGGCCCCACACCUCCCUCUCUCCCUCAAGCAGCUGACAGCCAGGCCCCACGCCCUUUUCUCUCUUUCAGUCGCUGACAGUUUUAUUUUCGCGUUGAGAGCCCGAGUACGAGGAAGCUCUGGACGCCACUUUCGAGGGAGAAGACCCGCACCCUGUGCAAGGCAAGCCUCUUUGAUCACAUUGCCCCUAAAUUUGCAAAGAUAUGUUAUUUGAAAAGUGCAUUGCUUAGUAUACACGAUUAACAUGUUUAGGCCUCAGAUUAUUUAUAUAUACAACCGACGGACCAACCUAGUAGUCACACUCACAUUGCGUAGGUUGUUGUUUCCAUACCUUUGAUAGCUCCAAAAAUGUUUGUGCCGAUAUCGUUACACGAUUACCGAGGUAGUUUCGCUUAGCCAUGCUUACGUUGUUCGCCGUGUGGGAAACUUGGGUUAUUCCAAAUUACAUGUUUAAAAAUCCCGCACGUUGUACCGAGGAGUUGUGAAAUAAAAUGUGUUGUUAAAGUAGUGAUGAUGCGGAGUCAUGCCUUUGUGGUUUGGCUACGUAUUGUCGUUAAGGACCGAUUCCUUUGGGAAAUCCAUCCAAACACGUUACAGUGCGACCACACGGGUAUUUAUGGGAUGCCUCUAGCUAAGUAAAUUUUUAUCACAUGGGAGUUGGUGUGCCAAUGGUUGUGGAAUGCCGAGGAUGAGGAGACGAAGUGUUACACAUUUAUUGCCCAUCAUGGGUGUCUUUUUGCUCUAUUGUGGCGUGAUACCAGUAAGAGUAGGAGACAUCCUCGGUAUUUGCUGAGUGGAUGACGGUUGUCAUUGCCUGAUACUCGGCUAUGGAUCUUAGCCCAACUAGGUGGCAUGCGAUUUUCAUGGGUUAGCUUUGGAAAGGCCUUAUCAUGAACUUCCGUUACCGAUGGGUAGACGGUGUAAGUUUCGUGUCGUGUGGGUAAAGCGUGUAACCUCUGCAGAGAUUAAUGAACUGUUCAAACAGCCGUGCCCGCGGUCAAGGGCGAGUGUAAGGUGUUUCUCAUAGCGUAGAUUUGUUUGACAAAUAUUUGUGAAGAAGUGGUUAUUGGGAAGGGUAACGUUUCUAGAGUCCACCUGUGUGGCAGACGGCUAACCUUUGUGGUUAGGAAUGGGUCUGUGUGACCUGGGGUGUCGUCCAACACCGAGGUGUUGUUAGGGUCAUGAUGGCGUUGAUGUGCUGAGAUAAUUGUGUGAAUUGUGUUAUUGUGAAAGUGAAAAGAAACUAAUAGAGGAAACAAAUUAAUUGUUGUUUGUUAAUGUGACAAGUUGUUGCAAAGCAACUUGUGGAAUGGGUUGAGGCUUGAGGCUCCUCCCGAUAACCAAAACUUGACUCACUCACUAGGAGUUUUGUGAAAUAAAUCACUUUGCCAAAAAGGCAGCUUUCGCAAAUAAAACCUUAGCCUCCUUGUUUAAGCCAAACAUGUCAUUCUUUCCCCUAGCUUGCUGAGUACGUUAAGUACUCACCCUUGCCCCUUAUAAUAAUCUAUAGAGUAUGAAGAUGAAGACGCCGACCCGACCGCCGAGGAGUAUCUCCAGGAGCAAGCCGAGUAUGAAGACUUCUAGAUGUUUCGUGCCUAGCCCCAAACGUCGCCUGUGGAAUAAGUUAGUUACCUAGGUUCUUUGCCUAGUGCAUAGUUGCUUAGUCGUUUAGUUCUCCGCGCUGUUCGCUUCUGCGCCGUCACUUUUAUGGUUUUAUGCAAUGUUGCAUUGUUCAUCUAUGGGCCUAUCCAUGAUGGCAACUUAUGUAAGGACUAUUACCCAGUGAUGUAAUAAAGCACUUUAAUUUGAUUCCACAUUUAUUUUGUGUGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.98%
ME_num:
MEP:
31.91%
HE_num:
HEP:
6.91%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
4.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.87692101800496 | 5.9766265588561e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.5813419335784 | 4.15076963929216e-14 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.62259609731039 | 6.15948647080762e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.83012621705259 | 2.10989842638863e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.50248979670737 | 1.89772832954687e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 2.14509258952731 | 3.36058241823996e-22 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.91624994476548 | 1.05179757709879e-18 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.47162406426605 | 0.0051761879342407 |
| 9 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -2.05280403372306 | 0.0352645664610082 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.03096726680302 | 0.0019424447571933 |
| 11 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.24523038041985 | 0.0070762318263026 |
| 12 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.40597715461304 | 3.37398720751585e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.80687322630793 | 2.54478238459318e-40 |
| 14 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.70144817407162 | 0.000768727597694391 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.35662370927098 | 1.55311129107976e-15 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.12856107113507 | 0.00430315581393232 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.74075610350277 | 5.24215894976077e-11 |
| 18 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.8792420787881 | 3.0358401493937e-06 |