RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112936806

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

31705131

End:

31706532

Strand:

+

Ref_name:

LOC112936806

Sequence
(XR_003239189.1):

CUCUCUCUCACGGGGUGCGCAGGGGGAGAGGUGGGCGGUGGCGCGAGCGGCGGCGGCGGGCGCGGCUGGGUGGCGAGCGGCGGCGGCGACGCCACCUCCUCACCACAGCCGCUCCACCCCUUCCCUUCCCCUUCUUCCUCCAGGUCCGGCGGUGACGGCGCGGAGGAGCCGCCGCGGGGGCGUUGUCCUCCGUGUCGCAGCCGGCAUUCGCGCACAACGCGCGCGUGGCGGCCACGACGGCGUUCCUGCUCGACCUCGGGGGCCUCCUGGUGUUCGUCGUGCUGCAUUGGCCAUGCUUGUGCGUGCUAUUGGGGGAUUGAUUGGUAUUGGUUUGGAACGAUUCGGGCGCCAUGAUCCGGAGGAGGAUUCAGUGAAUUUCCCUCGCGGUUGCUCCGACCAAAUUUUCAUGGCCACAUUUUUCUUUCGGUGGAUGGCUUUCGUGUCAUGGGGAGUUGCAGCGAAUGGAUGCGAUGUAGCCACGCGUGAUUCUUGCGAGGUCGAAGGGCAGAGUGAUGGAUUUAGUAAAAGAAGUGAGAGUUUUCCUAUCUGAUUAUCUCGUCCUCCAUAUGCUGUGCUAAUUCUGGUUAAAUGCAAAAGUUAUUCUGAAGACUAACAAGCCGGCGGCGAGAGGAGGAAGAAGGGGAGAGGCCGGCAGCUGGCCAAGGCGAGCUCCUCCUCGUCGUCGGUCGUCGUCCGUGGCCUCGUCGACGGUGUCGUGGGCCAGCGGCUCCACCGUCAUGGACUGGGUGAGCCCUGAGACACCGUCUCACGCCGCUGCCCACUGCCCGGCCCGUGCGCCGCCGUCUGCCGCUCCCUCGUCUCGCGCCGCCGCCUGCCCCUCCGUGCCGCGAAGGUGAGGUCGGAGCGGUCGCAGCCGCGGUCGACGGAGACCACCACCUUGGCACCGAGGUGCUUCACGAGGCGGACGGCCACGGCGUUGCCGAGAAGAAGAACGCCACGUCGGCGGCGAUGAGCGUAGCCCGGUCUCUGCGGCCACCGCGGCUGGCGUCGCGCAUGGCGACGAGCUCCUGCCGGUUCCCCUCCUCGUUUCGCGUCGUCGCCGCCGCACACCGCCGUGCCCGUGCGUGCCUGCGGCCACGCGACUGACGCGAGAGAGAGAUUGGGAAUAACCAAAUAAGUGAAGAGUAGGUAUGACAGGUGAGUCUCACCAUUUUUUUAAUGAAAAAUGCUGACUGGAUUGCCACGCGGACGCAAUGUAGAAGAAAACAGCUCUAAAUUGAGUUGAGGGGGGUAAUUCUCCUGGUACUAAAAGUUCAGGGUGAUCAAUAUCUGGUUUUCUAGUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

379

LEP:

77.03%

ME_num:

105

MEP:

21.34%

HE_num:

7

HEP:

1.42%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.87

Avg Expression:

2.27

Tip: OSA-LNC112936806 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-3.122784169555410.0483668121863549
2Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae2.299605700040716.06862496199627e-05