RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112936704

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

15747763

End:

15748652

Strand:

+

Ref_name:

LOC112936704

Sequence
(XR_003239127.1):

GAGAAGAAAGGAAGACCGGGGAGAGAGGGAGAGAGAGAGCCAUCCGUCACCGCGAGCGGCGCCGCCCUGGAGCGUUGCGAUGCUACUGCUGGCUUCUUCCUGCGAUGCUACUGAGGUUGAAGAAAGCUUCUGUCUAGGUUGAGCCGGAGCCAGAGGAGAGGCCCAAGGUCGGUGCCGUGGCAGCGGCGCAUGGGGAGGCGGCGGAGGAGAAGGUUGUGUUCCCGAUGACGUGGACGGACGAUGAUGAGUCGUGCCCGGAGGGGACGGUGCCGGUGCGGCGGACGACGAAACGCGACGUGCUGAGGUCCAACUCCUCUCUCUGUUUCGGGAUGAAGCAGCCUCGUGUCGGCGUGCCGCUGGUGUCGUCCGCGUGAGGAAGAAGAUGGGAUGGGGGGUCGCUGACAGGUGGGGUCCAUAAGCUGACUCAGCUAGUCAACGGAGGGUCCACCGUCACGUAAGUGUCACGUAGGACAAAACCGCCUCCGAAACCGCCGAGGGAGGUGAUUUGCUCUGGUUUUCAGAGAAGGAGGAGGCAUUAUACCCGGUUUUCCGGUUGAGGGAUAUUAUUCAUGCAAGCGCAAGAGAUGAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

458

LEP:

93.09%

ME_num:

29

MEP:

5.89%

HE_num:

4

HEP:

0.81%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.98

Avg Expression:

1.92

Tip: OSA-LNC112936704 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-5.285196255648570.0242691179752903