Chr:
Chr10
Start:
1799162
End:
1801914
Strand:
-
Ref_name:
LOC112936686
Sequence
(XR_003239095.1):
CCCCUCCCUCCCACGCGGGUCUUGGCGUCUUGCUCGGGUGAAGGCAGGCGCGCUGUGGCUCGGUGGCUCAAGAUCCCCAUGGAGCUCCAUCACUGCCGCCCGACCUCAUCUCGCCUAGCAUUUGUGUGUGCGCACCUGCUUUUGGGCGGUUAGCGAAACGAAAGUAAAGACACUAAUGUAAGACAGCUCAAGCGAGUCUAGCCUGAGAUAUAAAAUCACACUAGCCCUGCCCUCUCUCCACCGCUGUUUGUGGUGCGCCGCCCGGGGUCGUCGGGGUCGUGGCCGUCCGCCUCCAGUCCAGUCUCGCUGCUAGCUCCGCGCCACUACGACCGCGCCCCUCGGUGAAAUACAUGCACGACAGCAACCAACAAUCGAUGCCGUGUCUGGAUCCGCUCGUCUCCAUCGGCAACGUCGCCUCUCGGUCGAUCUCCACCGUUUCAGGUUUGCAGUCAACAAGCACAUAAUAGAAGCGUUUCAGGUUUUUUGCAGUUUCAGAGUGCCAACAUCCCGCUUUUACUUGCUUCAUGUUUGUAAUAGUUUCAUAUUUGCAGUUUGAUUCUAAACUACUCAAAUGUUUUCCACUGCAAUCGUGUGGCUGAUUUUCUUAGACAUCUGUAUAUGUCUAUCCACACUAUAUAAUUCUUGCUAAAAUUGCCUGGAUCUCAUUACAAACCAUUCAAAGUGAUUUAAUCUCAAAAUUUUAGUAUUGUGUUUUUUUAAUGUGCACGUGCUCCAUUAUGCACAUUUUGUGCUAUUUUCUUUGUUUGAUCAAAUUCAUGGGUGUUAAAGCGCUGCUUGUUUCCAUGUCAAAAACUAGAGUUCAUCUAUUUAUUAAGAAAUCCUAGUUUUAUCAGUAUUAAUUUGGGUCAAAUUUGAGUGCAUUAAAUUGGAACAGAUGGGAGUACAUAUUCAGAUGUUAUCAAAUAGCAUCAUUCUACUUUUGGCAGGUAUAAAAACAAAUGAACAAUGGCCAGAAUUUCGAAUUUGAGCUCCAAAAGAUAUUAAUGGAUUUGGUGCCUGCAUUGUCAGGUUACAGGCUUGGAUUUGUCCUUCAAUAUAUAUGUUUGGUGCCUACACACAAAUAUAAUGUCUCAUAUUAACCGAUUUACUAGCAGUUUGCUUAAUUGACUCUAAAACAAAACCAUGAGCUUCUUGAGAUUGGUAACCUGUCACUAUUAAAGUUCUUUUUGGUUAGAUGUGUAGUGCACACUAUUUGUUUCAGCAACCAACUAGUUGCACUUCAUAAUAUAUGCCAAACCAAGAACCAUAGUGAAUUCAGGCCUCAUGAUCAUGUUCGUUUGAAGGAAAAGGAAUCUGACUUCCAUGCUUGUCUGGAUAACAAAUUCAGUUUCAAGGUAUGCACUGGGUCAUUUAGAUUAUAUUUUAUGCACUACAGUUUUGUAUCUGACUCUCUGACUUCCUACCAGCAGUCUAACAACAAGCCUGACCACAAUGAAAUUCCUGCAGGAUGCAUUCAACACCUCCUUACUUUUCCUGUUUAAAUUUUAUUUUUUUAGUUGUCAAUUGGUCUGUGCAGUGUUGAGGAAUUUGGAACUGGAACAAGAGGAGAUUCUAUAUACAAUUAUUGCACAAUGUCAUUGAUUGCAGGCUAGGAGUACAAACUUGGUUGCACAGCUGAAGGAGGAUAACGGAUGACUUGCAGUAGAAGAAUAGCAUGGUAAAAAAAUCCCAUUUUUUCUUCUUUCUAAAAUCCUAACAUUAUCUACUGGAUCGAACCAUUGUUCUUGUCGAUAAGAUCAAAGUCUCACUACUUCACCAUUUCUAUCGAUCAUGUUUGAAUUUAGUUUCUGUGAUCAUGGUUUCAUUGUUGUGAGCAUUCUAAGCCCCUGUGAUUCAUUGUUAUUUUGCGGAUCCCUCUCUUGAUGGGGAUUGCUCGUGCAUGAGCUAGCUACAGCCAGCUGUCAUUGGCCUCCUCCAUCGAUUUCUACCUGUAGCUAAUCUGUUGUGGUUGCCAACGGGUGUGUCUGCAAGAUCAAGUUCUCAACACUUCCCUCUCUUUUUUCGUGCGCACGCUUUUCAAACUACUAAAUGGUGUAUUUUUUACAAAAAAGUUUCUAUACAAAAGUUAUUUAAAAAAAAUAGCUAAUACUUAAUUACUCACGUGCUAACAGACCGCUCUGUUUUCCGUGUAUGGGAGAUGGGUUCCCAACACCCACCUCCAAACACAAGUCCUGCCCAUAACUCCGCACAGAACUUCUAAGGUUGUCGGUGCCGGUGUCAUCAUCGGCUACUAUUUGUCCUUUGCAGAUGCAACUGGAGCAGCGAGUCUACUUUUUUUAAUUGUAGAAUCAUAUGUGUUUGUGCCCCUGAGUCUUUGUAAACAUGUCUGUAGUUUUAUAGUCGACAAAAAUAUGGUUGUAAUUUAUUUUGGCUAUAUCGAUUUGUUGGUAAAUAUUUUACUCCAGCAGUCGGGAAGUAACUUAUUUCAAUGAGAGAAGAUUGGAGUAAAUUUUGUGGCUAAGCAGUCUGGGAGAAAUUUAUUUUCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
32.93%
ME_num:
MEP:
57.72%
HE_num:
HEP:
9.15%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.80
Avg Expression:
9.36
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.14269302926716 | 7.10218310572348e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.46863714028256 | 3.11803016473498e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.88356672536775 | 4.19051266547336e-13 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | -1.89859323802778 | 0.00720228754521445 |