Chr:
Chr10
Start:
6842003
End:
6846259
Strand:
-
Ref_name:
LOC112936684
Sequence
(XR_003239093.1):
GCGUAUACAGCGAGCGCGCGCGCCAGCCUUAGGUUGGUCGCGGCAAUUACGGCGUUGCGCGCGACAGCGACCCCCGCGACGAGCCUGCGCGCGUCGGCCGAGCGUGACGAUUAGCGCCCUGGCCAAGAAGGCGAGCAGACCCGAUGGUCAACCAUUUGUAUAUGUUAUACCCUGGCCUUCUCACUACAUGGUAAAUGAAAGCACUGAGCCAACACUUGGAAGAUGCAAUGCAAACUUCCAUGAAGGAAAAUAAUAUCUCAGUUUUCUAUUGGACGAGUUGUGAUUACAAAGGAAUGUAUGUCAUGCUUGUAACAGAAACUGUUCCUUGAAAAAUUAAUGUCUUCACAUUGCAUAUCAUUGGUUUGGUUUGUGCUGAAUAUACAGUUUCUUUUAUAAUUUUGCAUGAAAAUAUGUGAGAAAUUGGACCAACAGUGCAAUACUCAGCUUUCUAUUGGUUUGUCCCUCAACCUGGCAUUCACCUUUCAUUCUAUUUGUAUGAAGUGAAUAGCCAAAAUGUUGGUCUGUUCUUGCUAAACUUGAAUUUUUAUAUUAGUGCACAACGAAUUUUGUUAGGUGGUUGUGUGAUGAACACAGAUAAGGCUUAUUUUGAAGUUCUCUAUUCUGUUUAGUGCAUUCUAAAUUUCAGAUAUUCACAUAACUAAUUCAUACUCUUCAUAUAUACUGUCAAUUGCUGGAAAUAUGGGAAACAUUAGCAGGGAAUGACCUGAUGUAUGUUGUUUACAAAUUUAAAUUUGCCAAACAACAAAUGUUAUUUGUUUACAACUGCAAGGAAUGACUUGCCUAAGUGCAAGCAGGGGUAACAAAAGAAUCUGCCAGCUGCCGCAGCUAGCAAUUGUGUCAUUUUUGAAAGUUUUGAUCACACUUCGUCUAUUUAUAGCGAUUUUUUUUUACCUUCCACGAGUUAUAUAUAAUUUGCAGAGCACAACUGCACUUCAGUGAUACAAUGACUUUUUAAGAUGGCAGUGAAACUGUGGAAAUAAAGGUUUGUUGUUGAACGCACCUGAUCAUGUGCUCUUCCUUUUUGUCCUUAAUUAGCAACUUGAUGGUCCAUCCUUAAUACGUUCAUGUGGACUAUCCCAUUUUCAGUUUAACAGACACCUGUACUCAUUCGGUUGGUUCUAUACACAUGUUUGAAAAAAAAUAGGACAUAUUUUUUCCCUGAAAUGUCUACCAUAGGGAGGUGAUGCCAAGAUGUUCAUUUCUUUCACGCGGGAGUGCUAGAUGAUUUCCCAACUAGCCCCUAUUACAUUUUAUUGCCCCUUUAUUAAGCCUCUAGCUAUAACACUUUACACACACCAGCUUAAUUAUCUAGCCACAGGGACAGGGAGAAGAACUCUAUGUUGAGCUUAUUGUGCCAUCUGUUCCAUCUUCCAUCAUCAAUCAUUAAUAAGCAUGGCUAGGAAGUGCUCUAGCUGUGGAAAAAAUGGGCACAACUCCAGGAUUUGCAGUGGCCAAAGAGUUCUAGAGCAUAGCAGCAGCAGCAGCAAAUUAUUCCUGCACAUAAUCGAUUUUCGCAAGGGAAGUGAAUACUGCUGGUUCCUAGCAAAAUCACAAGUUGUUAUGGACCUACGGUGCAUAAGCCGCAUGGAGAUCUUUGGAGGGGUAUAUAAUUGAUUUUUCUUAAUGUAAUAGCUACUGUUAAUUUCGACAAAUUACAUUGGUCCAAUGUCAGUUGAGCGCGGCAAGGCCGCGCCGUUGUUUCUAGUAACUAUCUUAAAAUUUCCAAUAAUUUUUAGCAUUUUUAUUAAGGACUAGAAAUAAGUAUACUACAACACGAUUUAGAAAAUAGGUACACAAGUUGUUAUUAAGUAUUACCUUUAAUAUAUAGUCUCAGUAACAUUACUGGAACUGAUAUUUGAUGGGUCAUGCAAAAUCCACAUUAGUCCCAGUUCGAGUAGGAACCGGGACUAAAGAUAUUAUUUAGUCCCGGUUUAAAAUUUUAAGAUCUUUAUCGACCGGGACUAAAGAUCAUUUUUAGUCCCGUUUCAAAAUAGGUCAGGUGUCCCACCAACUCCGAGAAUAAAGAUAAAUGCACCGUAUAUAGGGCCUGUUUUAGGGAGCUUAAGAUUCUGAGAAACAGCUGCUGAGAAGCUAGCUGGUGAGAAUCUAGAGAAGCUGGGAACUAGAACUCAGCUUCUGACUUCUAAUUCAUUUUCUAGAUUCUACAACUACAGAUUCUCAGAAUCUAGGUAAAAAGCUGGACUGUUUGGGGGAGCUUCUGGCAACUGGAGAUUCUAGGAGAAGCUGCAGCUGCUAAAAGCUCCCCUAAACAGGCCCAUAAUCCCUAGCACUUAUCCUCAUCUCCACACAAACUACUCCUCAUCUGUAACUAGCUUUACUCCUCUCUCUCUCUCCUCUCUAUCUUAUCUCUAUUCUCUCAUCCUCUUAUUUUCUUUUCUAGCUUCAUCUCUAGCGGCGAGGCGCAGCACCGGGCGAGCGCGGCGCCGGGCGGCGGCGGCGCCUGUGCGCGGCGCCGGGCAGCGGGGGCGGCCAGCACUGCGCCGGGCAGCGGCGGCCAGCGCGGCACCGGGCGGGGGCGCAUGCGCGCGCUGGGAGCCAUGUCGGGCGGCGGAGGCGGCCAGCAUGGCGCCAGGCAGGGAGUAGCGCCGAGCGGGGAAGCCUGCACGCGCUGGGCGGGAGCGGCAGCCAGCGUGGCGCUAGGCGUGGAUCAGCGUCGGGCGGUGGCUUGUGCGGAGAGCGGCGGCGGCAUGUGCGAAUGCGAAUUUUUCCUGUGAAUUUGUUUAUUUGUGAUGUGAAUUUGUUCACACUGUGGAUCUGUGAAUUUGUGAUGUCAAUUGGAGUAUGUUCAUUGGAUCUAUGAAGUUGUGGAUGAUUUUCUGACGUUUUGUGAAUGGGAUGAUUUUGUUGUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.64%
ME_num:
MEP:
61.99%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.70
Avg Expression:
4.89
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.37911280933685 | 0.000387388074770581 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.71840138806315 | 4.80583895848726e-07 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.03330059377366 | 0.0196816460899312 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.13285055764814 | 0.000537076537223435 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.12082016177967 | 0.00261093246123884 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.12851215945893 | 1.3650526873734e-05 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.45666418149757 | 0.00370033613436656 |