Chr:
Chr10
Start:
22575236
End:
22576208
Strand:
+
Ref_name:
LOC112936682
Sequence
(XR_003239091.1):
AAAUUUCAGUCAGUGAUGAUGAGGAAGCAAAGCCGCUCUCCUUGUUCAUCUUCUUCUUCUGCUGCUGUUGUGUCCCUCUGCAAGGUGCUCCUGUUGGUCCUGGCUCUCAUCUGCACCCUGGAAACUGUCUCAGUAGAAGGAGAAUUAUAAAACCGAAGGAAGUACUAAGGCUGUGUUGGAGGAGGAGAUAGAGAAGAUUGAGAAGAUACGUAAAACGAGGGAGAGUGGCAGCAGCAGCAUUAGUUGGUGGGGGCGUACCACUGAAUCCACGGUACCCGGCGAUUCCUGAAGAACCUUACAUAGGCCGGAGAGGCGAUCCGUACACAGGUCGGGGAGGCGAACCUUACACACGCCCGGGACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
42.48%
ME_num:
MEP:
5.08%
HE_num:
HEP:
52.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.80
Avg Expression:
235.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 5.19779408762303 | 1.09324334664235e-05 |
| 2 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.36023617062958 | 0.0305886400209128 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.85860147095734 | 2.3141656042708e-05 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.62654757534149 | 2.83116990883355e-08 |
| 5 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | -2.28414814529315 | 2.73781591186873e-07 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.55383782260434 | 1.16030259966905e-08 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.10508760503922 | 0.0031730355789617 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.50770258048393 | 4.7420417152494e-08 |
| 9 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.70493846167806 | 0.000134423785807036 |
| 10 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.49109092366763 | 1.92452688383727e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -2.04706507986242 | 5.02489750823816e-05 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.55305894556941 | 1.64471281677269e-07 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.17009796111481 | 2.46906790825508e-05 |
| 14 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.53950825866649 | 2.84094393808151e-05 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.24265126457591 | 1.12130817493777e-06 |
| 16 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.539594754532 | 2.79394183384652e-05 |
| 17 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.53973764019856 | 2.85910226255573e-05 |
| 18 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.89472903906369 | 0.000920066278363454 |
| 19 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.22272083402739 | 4.5194934374613e-30 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.80175068120625 | 9.7832158812257e-06 |