Chr:
Chr10
Start:
20405326
End:
20406185
Strand:
-
Ref_name:
LOC112936681
Sequence
(XR_003239090.1):
GUCUCACCGGAUGUGAGAACAAGACAAGGGGCAUAGUGCCGCCGAUGCCGAUGCCUCCUAACACAACUGUCUCCCUGCUCGACGCUUGCUCCAGGCGCCUCCCGCCCAGCGGCCUAGGCCCGGCCGGUUGCCGCCGCGCUUCCAACAACCUGCCAAUCCACAAGGCGCCUGCCGCCCCUACCCGGCAACCCCGACUUGCUGGUAGGCGGCGAUGCCUUAUCAGCUCAACUCCUUGGCUCGCCGGUGCCGUCACAACAUUAAGCAAGGAGGCAGAAGGCCAGGAGCAGCCGGCCCGAGCAUAUCAAGACCAGCCCCUUUAGGACCUUGAUCAACGACCAGAGAUCACUGAGUUUUUCGGUAUCUCUUAUUAUUCUCAAAGAGCAAUUUUACGGGACUUGAGGAGAUAUCAUGAGGAUCAAGAUCCAUAACUACAAUUGAAGAGCUAAGGACAGUAUAAUAUUAUGCUUAGAGGAAGCUAACCUAUAACAAGGUAUUUGUAUUUAUGUAACAAACCACAAUUAAAUUUGUAUUGUAUCUUUUUAUCAUGCAUUAAGGAAUAUCCUGUGUCGCUGCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.08%
ME_num:
MEP:
18.9%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.92
Avg Expression:
1.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.01422382289274 | 0.00740305831564445 |
| 2 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -3.74971638662239 | 0.00549300723338437 |