Chr:
Chr10
Start:
21263817
End:
21268505
Strand:
+
Ref_name:
LOC112936668
Sequence
(XR_003239069.1):
AAAUGUUUUAUAAAAAAAACACAGCAACAGUGAAAAGAUUACUAGCUUGACGCAUACAUCUUUCGUCCCAUAAAAUACAAUCCUUAAACUCUCCUUGGUUCAUGCCGGCCGGCCGGCCGGCGAGGUUCCCGGUCGUCGCCGUCGGAGCAGAGGCAGGACAAGAGGCCGGCCGGUGGCCAUGGCGAUGUCACGACAGCGACAGUUUGCACAGCUGCGUCGUCGUCGCCAUUGGCGCCAUGUCGAUGUGGACUAUGAUCAUCAAUCAACUCCUCCUCCCCUGACGUAUCACCUGCCGAGUAAUAACAGGUAGUUGAACUAGCUACACUUGGUUGUCGCGUCUCGAUAUUUUCUUCAGAUCAAAUUGGCUGCCCCAUUUCACUAACAAACAUCCACGCCCACAUCAAAACAAGCUUCUGACUGGACCAGCAACCAUCUUUUUCUCUAACAAAAGUGAGGCCCAAAUUCGAUACAGUACCACCAUGUUCUGUACACUCUGCAAUCAGCAAAGCUCCAUCAUUUGCUCUUUAGCUUAUCAGUUACACAUAAUAUUUAUUUUUUCAAAAAACUUGAUUUUAAAGUUGGUUAUGAUAUUUUUUUUAUUGUAGUUUACUUUCUAACAUUGGCUUUUAAAUCUCAUAGCAUAGAUAUAAUAGUUUCACCCAUAAACUAUUUUUUCUUCCUUUGUUCUUUUAUACGGCUUAUGAACUACUUCCUCUAUCCAGAUUCGUUGUACUGGAAUGUGUCAUAUUCAGUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.6%
ME_num:
MEP:
10.37%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pistil
Tau :
0.97
Avg Expression:
10.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -5.21171101852838 | 0.0327397021982937 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 5.32123291037078 | 0.000844396707949873 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 4.09816122407304 | 0.0192383646157697 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 5.82376496503448 | 0.00376803991071858 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.41969261577293 | 0.00327870814106584 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.2821779121819 | 0.0302962394898911 |