Chr:
Chr10
Start:
21022194
End:
21027420
Strand:
-
Ref_name:
LOC112936653
Sequence
(XR_003238992.1):
GGCCGGGGGAGGAGAGGGUGGUUGGUCGCGCCACGUCAGCAGGGCCUCGUGGGGGAGGGGGCUGGACGCAUCAACGGCCAGGAUUUGUCGAUCGCGGAUGAUGGAAACGUUGAUGAGCGGCUGGGAUGUCAUGGUGAGGAAUUGAGGAUACACUCAUACACGCCAUUUGGCGAUGCUUAAUAUAAAGAUGGUGAUCUGCUACCGGGAUUUUAGCCAGAUGUGUCCGCGGCGUUGAUGCGGUACAAUGAUGUGGCGUGGAGUGCGGGAGGAUGCAGGGGUUCAACGACAAACCGAGUGUUACGUGGAAAGGUAAAAGGUUGUAACAGAACGGUAAAAUGACAAAUGCCUUUCUAAGCUGGAUGCACUAAUUUGGUAUGUUUCGUGUUCUAAUUACAUCGCGACAUAAAAUAGCCAGGUUUCGGAUACGUUAUCGUUGCUUUUAGGUACGAUAAAACAUUUAUGUAAAGAGAAGAAAUCAUUGCGUCACGGAAAAAUAAUGAUGUGUCCUGAUAAGAAAUUUUGGUCCGUGGUAUAUUUGAACGGAUGGUUCUAGAUGUUUCAGUUAAUUGAUAUAGCGUGAAAGUUUAAUAAAUUAUAUCUAAUACGACAAGAAACCAUUAACCUUACAUAGGGUGUGGGGUUUUUCGUUAUUUCAGCAGCUUAGUUACAUCAAACCCUUUCUCAAAUGUAUAAAAGAAAUGUCUCAAACUUAUAUAGUUAAUGGCAAUCACGUCUUAAGCUAGCUUUCUUUGGUAUGGAUAAAUUUUAGGGUGAAGUAUAUUUUCAACCCUUAAACCUUGCUCGAAGUUAAUUUAUUUUUCGCCUUGAAAAAAAAACAGGUAAAAAAACACCCUAUGAUGUUAUUUUAGAUGUUUUAUUGGAAAUAGAGGUGGUUUACUAAUUCAUAUGCUCGUAUCGUGCAAAAUUUGUCGAUGUAAAUGUUAUUUAGGUAGGCCCAUGACUAUGGCUGUGUUUUUUAGCCUAAGUUCACAAUUCACCUGCCUCGUUUUUCACGCUCAUGUUUCCCAAAUUGCUAAACAAUGUGUUUUUUUAAAAGAAAUACUAUAGGAAAGUUGUUUUAAAAAAUAUAUUAGUUCUUUUUUAAGUUUUUUAUAGCUAAUACUAUCUAAUCAUGCAUUAAUCCAUUGCAUAGUUUUGCGUGUGGAUAGGAGGGGUUCCCAACAAAAAAAAAGUACACACCUUAUAAAAUCUACCUAAAUGGGGUUUCUGUAAGCGAAAAGACUUUCAUAGAGAAAAUCACCUUGAAAUAUAUUAUAGGGUUUCACAUGUCCAGUUUUAAAAGUUGCAGGGGAAAAAUAAUCAAUUUUAUAGUUUAAAGUAAAAAAAACAGAUUUGACCAUAAUUUUUACGGGAAUGUAGAGGGAGUUAUAGCCUACAGUAUAUGAUGUGGGUUAUUUUUGAUUGAUGCCAAAAUGCGCCAUAUUGAUUUUUUUGGUAGUUGAAUAGUAAAAGUGAUAGUUCGGUUUGAAGCCCAAUGGUUAGUAGAACAUUUUUUUAAUAAUACAUAGCACAAUCCUAAAACUUUAUUCACCGUAAUAUAAAAUUCUAACAUGCUCAUUUAUAUUGCCAUCGUGAUCGUACCAAAACAUGCAUAUAUGACGAGCAUCACGAUGACAGUGGAUAUCGCGAUGUACGUACAUGUACACUGCUGCCAUCCAUCGCCGUGAGCUUACGCUCACGGGGCCGAUCGAAGUGACGCUAGCUAAGCUCCAGCUUGAGCAGCAGUGAGCGCGCGGCUUCAUGCACCCUGCACAAGGCACCAAAUUAGAUCUGACAUGCAUUACACCAUGCCGCCUGCCGACUGCCGUGUGUCACGCUGCAUGCGAGAUGGUACGUACUGGCUAGCUCGAUCUCUUCGUUUCGUCGUCACUCGCGAUAAAAUAUCGAUCGUCUCCGCUGAUUUCCGAACACCGUACGUACCCAAGCUUGGGUGAGCUCUCGCUAGCUUAGAGCAGAUACAGUAGCAAAUUAUAAAUCAACUAUAAUUAUAAAUCAACUAUAAACUUCUAAAGGUGCAAGUGGGUUUACCCACGAAUAUGCUUAUAGACAAAAAUAGUGCGUAACCGCCGGUUUGACUAGCGGGUUAACUAUGAAUUUGACUUAUAAAUGGGUUUAUAGUUCGAUCCACUUAUAUAUUUAGAUGCGGCAAGCCGGACCGCAAUGCGAAAACCCAUAAAUUAUUAUUUAUUUAAACUCGCGGAUCGGCCCGCUUGCACCCCUACUACUAUAAACACAUGUCGAAAAGAUAAAAGAAGAGAGAAGAACAACGAGCUACAAAUUUAUAGCUAAACUAUAACACAGACUCUAAAACGUAAUGUGUGUAUGAUAUGUGAGACCAGAUAUUAAUUAUAUAUUAUGUAUGUUUAUAAGUAAAUAUUAUAUGAAUUGACUAUGGAUAAUUUAAAUUAAAAGUAGUAGUUGUUGCCUAUGUUCUUACAGUGUUUUGCAUGUACUACCAGCUAUAUAUAGCUAUAGGUGAAGCGUCGAUGUUACCAUACCUGAUUUCUGCUUGGUUAACUUAAUUAUGGCCUAUGGGGCCCCGUUUCUUUCAUUCAUAUGUGAUUUAAUUUUUGGAGGGUUAGGUGAAGUGUUGCGUUUUGUGUCCAAUUCGUACCACAAGUCCACUACACACAUGCAUGCUUGUUGAAAAACAUGAAGGUCGAUUUACCACUAGCUAGUAGUACCAUCUAGUUAAAAAAUCUCGAAAAAGUAGGAGUACCAUUUUUAAUAACUCGACUAUAUAUGAAUUCUGUUUAAUUGAUAUAUAAUACUACUAAUCAAUAACACGCCGUCACAACCAUAAACAUUAAGACAAAGUUAAACUAACUCUCACAAACAUGCAUGGCUAGCCAUAUAUUACAUUAUCUCGUUCUUUAAUUCUACAUAAUUUGUGCCGUCAAUCCAUCUAUAUUUUGACAACAAAUAUCUUUUAGGUUAUCUAGCUAGCUAGAGAUGUGGUUUUUAGUUACUGCACCAUCACUCGUGUCGGCGGCGGCGGUGGUAGGUGGGUGAAGGAGGCAGGUGGUCAGGGCGUGUGGCGGGUGGGCGGAGGAGUAGGCGUCGACGGCGGGGAGGAGAAGGAGUAGGCCCGGCAGUGAGGAUCUGCAGCGGAGUAGGAGGCAGUGGGGGUGUUGGCGGCGGUCACAGGUGGACGUCGACAGUGUCGCUGGCAGGAAUCUGGAGCGAAGGAGGCAAGCGGGUGGAGGAGUCACCGACGGGGAUGGGUAGGCGGAGGAGGAGUCGGAGUGCGCAAUGGGUGGGUUACGCGACAGGUGGGAGGUCCAGGCUAUUGGAUAUGACGAUCUGAUGGUUAAUAUUAAAGCAAGAAUAAUAGUGGGCUGUAAAAAUGCUGAAUGUUGAGGUGGAUGAUAGAUGAUAGAGAUGAGAAGCGGGCUGUAAGCUUACAGCCGGCUUAGACACAGGAACUAAGAAAAUCAGUGAGACAGACAGGUGGACCAUAUAUUUAUAGUGAAGAGCUAACCACUAUAUGAGUGAGCUGAGAGAUAGGCUAUAAAGAUCUAUACAGUCAGUAGCUGGCUAUAUUAUUAGCCUUGCUCUUAGCAUGUUUGUCAGAUGUGUCUGCUAUAUCAUGAACUAAGAAAAUCAGUGAGACAGACAGGUGGACCAUAUAUUUAUAGUGAAGAGCUAACCACUAUAUGAGUGAGCUGAGAGAUAGGCUAUAAAGAUCUAUACAAUCAGCAGCUGACUGUAUUAUUAGCCUUGCUCUUAGCAUGUUUGUCAGAUGUGUCUGCUAUAUAAAAAUCGAGACCACUAUUACAAAUUUAAGUAGUAGAGAUACAAUUAUAAAAACAAACCUGCCCCACCUUAGAAAAAAAAAACUUUCUGUGAAAAAGAACGAAACUACAUGAGAUUGAGGAGAAGAUCAUGUUUUGCCUUCUGCCCAGAUCGUCACUACUUUAACCCUAAACAAAUCUUUGGCGCAUCUAAAAGGCAAAAACAAAAGACACAACUAUGUGCUCAACACACUUGUUUUCCUACCCUACUAAUUUAAUGAUUCCUCCUGUUGCAUUUAUCCAUCCACGCAAGCAAGCUGCAGGUACUAACCAUAUGUAACUCCGAAAGCACCUGUGUUAUACUAAGAUAAUUAAGGUUUAAAACUAACACAACUUGCUAGACACUACACGUACUACAUGACAGUGAAUCAUUCUUUCAUAGACAAGGUUAAUAUUAUCGCUAUGCGCUCUUGACAGUGAACAUCAUCCAACCCGAAGCUAAGGUUAAUUGUCACCAUGUGCUUCUUCAGUUCUCCUUUUCUGUGACGACCAUGCAUUAUACUUUUUCUAUCCAUAAAUCCAUAAUAAACUUGUCUCACUAGUUCAACCGGCUUAUGUCAGAUGAACCUGUCAUCCAAUUUAGUUGAUUUCUACCGUUACUGUGUUCUAAUGGGAAAAUUGGAUUGGCUACUUAAUUUCUUGAUUUUCGUUAGCAUAUUUUAAAAUUGUUAAACUUUGCAUUUUUUUAGAAAAAUAAAGUAAAUUUAUUUAUUUAUUCAAUUAUUAAUGCUUCAUUUUGCGAUUAUUUUUCAUUUUGCAUGUGACUAAUAAGCCGUUCUCAUCCUCCGAUUAGAACGUGAAUAAAGUAUGUUAGUACUUUCUUUAACAUGGUCCAUCAAUAAACAGGAGGUAAAUGCGAUGAUUUUUUAAAGCCAGAGGUAAAUGAUUUUUCAGAGUUUAGAGAGAGAGCAACACUUUGCACUGGCAGAAGAGUGGCCGUAGAGAUUGCGUGCUGGCUGGGCCCCGCAAUGGGCCCAUGGGCCCACAAGCCGGGCAAAAACUUCGCACGAGGGACUCAUGCAGAGCCGUUCAUUCACUUUCACUGGGGCCCACCAGCUCGUCCGGUGCGUGAAAGCCUAGUGGGCGGCGUUCCGUGGACCGAGUACGGUACAUGGGCCCAGUGUUGUGGUUGUACGGUCGGAUCGGAGACCAUCCCUAGCCCAUACUGAAUUCUGUAUCUCCAAAAGUUUCUCAAAUUCUCAUCCAAAUCAAGCCAAGUAGCCAACUGUUUCUUAUAUGUUGUCAAAUUUCACCGCAAGUCACCUUACCGCAUAAAAUUUCUCAAUGUGUUUGUACCUCAUUUUGUUACCGCAAUAUAUUUUUUCACUUCCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.36%
ME_num:
MEP:
46.14%
HE_num:
HEP:
6.3%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
3.28
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.12584867002754 | 0.0272821138102155 |
| 2 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.56681139784284 | 1.07582281980672e-07 |
| 3 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.14581024098263 | 0.0251250776579887 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.49462745469196 | 0.0194553976731801 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.92908606090235 | 5.20575393122231e-06 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.69760056832381 | 2.24494772198442e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.25579755294432 | 0.0215098453102621 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.71825183493701 | 1.80147625774979e-05 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.18295944230048 | 0.0123587810845804 |
| 10 | 9311 // leaf // control--/--9311 // leaf // salt | -1.80723081900898 | 0.0491642650556172 |
| 11 | Baldo // leaf // control--/--Baldo // leaf // 100 mM NaCl | -1.17716342968238 | 0.0466110992613427 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.96836741390169 | 0.00560348029745626 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.63718373987445 | 0.0023184374881745 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -2.04438030664622 | 6.56199681985696e-09 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.19951137446762 | 0.00521607673043428 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.5395763046543 | 0.000153106391219077 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.62215929891966 | 0.0103449418470362 |
| 18 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.15284524272419 | 9.49965351763517e-06 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.5959465386935 | 3.96731662907234e-05 |
| 20 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.15290742260884 | 9.73950835955769e-06 |
| 21 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.15300852648443 | 9.54705614170622e-06 |
| 22 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -4.80671775253596 | 8.44349209959802e-82 |
| 23 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -2.41991235265201 | 2.43373594049486e-20 |
| 24 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.43571284758619 | 8.09164571937471e-08 |
| 25 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.52694601485204 | 0.000674479467297315 |
| 26 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.68666479954491 | 2.57152967845116e-25 |
| 27 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.50833726592905 | 0.00523175424024259 |