Chr:
Chr10
Start:
10165188
End:
10167709
Strand:
-
Ref_name:
LOC112936649
Sequence
(XR_003238991.1):
GCUGUCCACAGUUUUGGAGGCUAGAAACAUUCGAUUUUAUAGCCGUUCGAUCUAGCGCCAUGAUUCGUGCGAGAUUUUUUUUCUAUUGGAUCCAAACCUGAUGACCAAUAGAUGUGCUACCCGUUGGCGUGUAUAGCUGCACGUUGCCUUUUUCCAGAAAUUUCUUGGAGGCGAGGUGGCCUAGGCGGAGGCGGAGACCCCGCCAGAUGCAGCUCUCGGCGAUUUUUUUCGCCGCCGGCCGGUGGGUUUCUUGCUGCCCGCUUCCUCACCGAUUUUUCCCCUUCAGCUGCUCGUGUUCCUCGCGGUCGCAGCGAUCUUCUCUGCCUCAUGCUCUCUACUCAAAAUUUCAUGUGAUUUUUCCACUUUUUGGUGCAUUCAUGUGAUGUUUUGUGUUCAGAUCCUGCAUCAUGUUUGCCCUAUAAAUCGUUUGUAUGUUUGGUUGGUGUUCUUCUCCUAGAUUUCUAGGGGAAUCGAUUCGUUGAUUUUCGCACACAUGUAUUGUUGUUCAUCUUGAGGAUGGAGGCGUCAAUGUUUUUCCAUUUAGUUACAUAAAUUCCAUCGUUGAUGUUUUUCCAUUUAGUUACAUAAAAAUGUUUAAUUAUAUUCCAGUUAAAUAGAGCUUAUAAGUUAGUUAUAGUCUAGUUACAGUCCAGUUACAACCUAGUUACACACUAGUUAUAGUCCAGUUACACCCUAGUUACACACUAGUUACAGUCCAGUUAUAACCUAGUUACAGAGUAGUUAUAGCUCAGUUACAGUUACAUUUAGUUACAGUGUGCCUAGUUAUUCAGGGUUUCUUAAUGGGCCCACACGUUCUAAACGGAUUGGUUUCGUGCUUUCAGUUGGUUCAGACCCGUUUCCUGUGGUCCGUUGAUUACAUAUCUUGAGGUGAAAAAAAUUGAAAGUUUUGACCUUAAAAACUGUCGACAGCCCAAUAGCUAAUCCCUUAAUAAUAUAAAAAUAAUAUGUGUAGAAAAAACGAUGUGGGAGUAUAUCCCACCACUCCUAGGUUUUAGGGCAGAUAUGUGGACAAAAAUCUUAAUUUUCAAAAAGAUACCAGCUUUUAAAUUAACAACAGAACACAUUUACCAUGAGGCUGCAAAACCUAACUCCUAACUCAUGAUAACUUCCUCACUUUGGCAAGCCGCAAUCCUACGGUACCACUAACAGAAUGUAGGAAGUAGGGUAUCUUUUCUGAUUUUGAGAGAGUGGAUAUAACAUGCAUCUGCUUUUUACUUGUCCUGUCUUGUCUUUUUUUUUUUUUUAGUUUUGGGUUGUUAUAUGCUGCUUUACCAUUACUUUGCCGUAGUGAAGGAUGACAACACUUUCAUGAUCAAAAGCACAGGGCAUGGUGGAGGUUGAGAGACGGGGAUGUGAUUUUCUUUUAUAAUGGGCAUAUAAAAACUCGAUUUUUGCUUCGUAGUAAGAAGGUACAGAAAAGUCAAAGCUUGGAGGGGAGAACAUUGAGAAGUGAGGGGAUGGAGAACAAAGCAUAGGCAUCUAGGAAGUAAGGGGAAGCUAGACAGAAAGAGGAUACGUUCCCAGAAAGAAACAGAUGAAGAAAAAAGAGGUAGGUCUGAUAGGUGGGCCUCCCUACUUUAUGUGCAAGCCACCACCAUAUAUGAUGGCACAUAAAACCACAAAUUUUGUUUCUACUUAACUGGUGGAACAAUUUAUUCUGUUUCAACAACUUAGGGUGUGGUCUAUAUUAUAUUUGUGGUUUGAGGGAAUAAAUUAGAUGAACAUAAAUAUAGUUUUGGAAGUAAAUCAGACAUUUUCCUAUUUCAAAAAUAAACAAUACAUAUAUACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
13.82%
ME_num:
MEP:
70.53%
HE_num:
HEP:
15.45%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
6.40
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.9568586361928 | 0.000628625037127849 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.9334421648621 | 0.000267851196764008 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 1.5655627143718 | 0.0158446300670469 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.03429914248315 | 1.14775535595164e-06 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -3.90763144885033 | 7.29780629848098e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.3901431039588 | 0.000281274972722093 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.68216578901801 | 8.31270193677206e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.30098522274914 | 0.0187726587657683 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.87384005204917 | 2.01583362052743e-06 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.37985939667805 | 0.014676697518877 |
| 11 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.08798391347403 | 3.88356978949675e-08 |
| 12 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.09999050108877 | 2.52027067442431e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.17100528918149 | 6.06367796531675e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.89493308582974 | 0.000277012133681476 |
| 15 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.19055760503812 | 0.00173804984545732 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.87296719406541 | 1.94109590732002e-05 |
| 17 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.36966941266804 | 3.2930879939284e-06 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.97122380527509 | 4.7839188025939e-08 |