RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112936642

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

21552985

End:

21559150

Strand:

-

Ref_name:

LOC112936642

Sequence
(XR_003238956.1):

CAUCAGGGAGUUCACCGCUAGCCGGAUUUCAGAAACACUGCAUGCAGAUCAAGAUCAGCAACCGGACAUAUAUUGAUGGAAAAUGGCAAAUAUCUCUGGAGAAGCCAAAACAGAAGAACUGUGCUUUGUUCAGCAGCAUAAGGGAGAUGGCUGGCCAUGGAAACCUGCCAUCCAAGCUCUCAGACAGGAGUUAGUGGUUUAGAUGGGAUCUAUCUGGUGGGCCAAAUCCUGCAGUUUUCUAUCCUCGCUUUACACCUGGAAUCCGAUUCAAAAGGCAACCUGGACCCCACCUGUCAGCGACUCCCAUCCACUAUUCCAACAGGGCUUAGGACACGGAGACAGCGGUGGCCUGACGGAUCACCGGAGCCUUUUUGUCAUCACCUUCCCUCCGGUUUGGUUGGCCUCACGUACGCCACCAAACCAAAUAGUAGUAACCAAAUCCGUUAAUUAAUUAAUUAUUAACUCCUACUUUGGGGACCAAAUCAGCCAUCAGAUUUCUCCUACUGAAUAGUAGCAAUAAUAUGUUAGCUCAAUGCGAUGCAGUAUUGAGGUGUGUGUUGGUGGUGAUUUUUUUUCUUUUUGAAACCUAAGCCAUCUACCGCUGGUUUUAUAUUAAGAGAGGGAAAGACUGUACUGAUGUUGGUGGUGAUUUGAUUAAGAUAUUACUUUGGUUGGUUGGGUGGCAUUGUACUGUA

Sequence
(XR_003238957.1):

CAUCAGGGAGUUCACCGCUAGCCGGAUUUCAGAAACACUGCAUGCAGAUCAAGAUCAGCAACCGGACAUAUAUUGAUGGAAAAUGGCAAAUAUCUCUGGAGAAGCCAAAACAGAAGAACUGUGCUUUGUUCAGCAGCAUAAGGGAGAUGGCUGGCCAUGGAAACCUGCCAUCCAAGCUCUCAGACAGGAGUUAGUGGUUUAGAUGGGAUCUAUCUGGUGGGCCAAAUCCUGCAGUUUUCUAUCCUCGCUUUACACCUGGAAUCCGAUUCAAAAGGCAACCUGGACCCCACCUGUCAGCGACUCCCAUCCACUAUUCCAACAGGGCUUAGGUGUGAUGCAGGACACGGAGACAGCGGUGGCCUGACGGAUCACCGGAGCCUUUUUGUCAUCACCUUCCCUCCGGUUUGGUUGGCCUCACGUACGCCACCAAACCAAAUAGUAGUAACCAAAUCCGUUAAUUAAUUAAUUAUUAACUCCUACUUUGGGGACCAAAUCAGCCAUCAGAUUUCUCCUACUGAAUAGUAGCAAUAAUAUGUUAGCUCAAUGCGAUGCAGUAUUGAGGUGUGUGUUGGUGGUGAUUUUUUUUCUUUUUGAAACCUAAGCCAUCUACCGCUGGUUUUAUAUUAAGAGAGGGAAAGACUGUACUGAUGUUGGUGGUGAUUUGAUUAAGAUAUUACUUUGGUUGGUUGGGUGGCAUUGUACUGUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

401

LEP:

81.5%

ME_num:

90

MEP:

18.29%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot_apical_meristem

Tau :

0.83

Avg Expression:

1.42

Tip: OSA-LNC112936642 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.424665586583890.00870542147178445
2IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h-2.573745521822810.0214177281635916