RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112936641

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr10

Start:

1645659

End:

1650493

Strand:

-

Ref_name:

LOC112936641

Sequence
(XR_003238955.1):

CUUUUUCUAUCAACGGCACAAAACCACACAGAGGCCACUGAAACAGACGAAUCUCCUCUUCCUGCGUUGGAGUUUGUUACCCUUCCCUUCCAAAGUUCCGAUAGUGGUGCAGUUGCGAGGCAAUCACCGAAUCAUUUGAGUUUACACGCACGCCACCUGUUCGACAAAAGGCCUCUUCGCGGUUCGGCCACCAUGGCGGGGACGCCUGGCAAGCGCCUUAGGUACACGGCCUCGAGGCGCGUUGGGUCCACGCUCAGCGACCUCCCCGAAGGAGUCCUCCACCACAUCAUGUCCUUCUUGGACUCGCGACAGGCCGUGCAGAUGUGUGUGCUGUUGCAGCGGUGGCGCAACCUCUGGCGCUCCAUGCCUCGCAUCAACAUCGACUGCAAAGAGUCCUCGCAUCAACAUCGACUGCAAAGAGUUCGAGGUGAAAAAAGGAGAGGGACAAGUGUGUGGAGCCAGCAGGGUGCGCGCGUGGGAGGAGAGGGAGCGACCGAUUUUCUCCCUCCAUCGGUCGACCGAUCAUGAGCAUUUUCGAUAACAUAUGUAUCCUAUCAAGAAAUUUUCAAGUGUCAUUACAUAGACUGCCAUUUCACUGCGAUAAUAUUUUUUUUUAAAAAAUGUCAUAAAACAAAAACAUAAUUUUAUUUUCCUACUAGAAUAUAAUUACAGCAUGACUAAUUCGCUGCAGCAAACAUAAUCUUACUUAAGAAUCACCAGAGGCCACAAGCCCAUUAAUUCGGCCCACUAAUGCCGUUUCCCGGACUCGGCCGAUCACAUCCGGCCCAGUAGCAGUCAGGAAGAGUGGAAGACGAACAAACAACUCAGGCGGCGGGGCUCCACCUUUCCGCCACCGCUGGCGAGACGGCCGGCGCGACGCGACGCGACGCGAGGCGGGGCCGCGUGAGACGGCGAGAGGUAGGCGGCACGGCCCAGGCGCAGCGCGCCGCAAGGGCGGGGAAGCGUGCGCGCGCGCGCCACGCGUGUAUGUACUGGUGGUUGAGGGAGGGCAUGCGUGACGCUGACGCAUCGGCUUCAAGCGCAUUCGCGGCCGCCGCGGUGGUGGAGAUGAGCGUCGAAGGACUGGAGGAAGCUGGAUGUCGGAGGGCGCAGGAGCGUUCGCCGAUAAGGUAUACAAGUAGCGAGGCGCGGUGGCGAUUGAAUUGUUAAGUGGGUUCGCCGCGUGCUGUUUGGCUUGCACGCUAACUGUUUGAUGCAAUGCUUCGCUCCUGUUGCCUUGCAGGCCCCUCCAGAAGUUCUACACUUGUAAGACCCCCUUCUUGACGGUAUCGAUCUGCAACAGUCUGUUCUUCCUGAAUCCCCUGGUUCAAUGAUGAAGAUAAGUACCUUACUAAUAAUUUAUUCAUCUUUUUAAGCAUACCACCUGUUCGUUCUCAAUGCCCCUCAGGAGUAAAACUAAGCUGACAAAAUGCAUUUCUGUGCUAUUUAUAUCUCUCGUCUGGUGCCUGUGAUUUGUUGAACCUUCAGGAAUGCUCUGCCCUUAUUCUUUUAUGUUGUCAGGCAGCAUAUAUAUAUUUUAAGUCAAAUAUGAGUUUUUUUCGUUCUUAUAAUGCGAGACAUCAGUAUAGGCUAGUUACAAUUGCAUCUCAUUUGUAAUGAUAUCAGUGAACAUGAUUGGUGUAUUGCGUUUAGAUGCUCCCAGGCUUGGGACGCUAAUAAUAGGAAGGUUAUUGAUAUAGUUUUUUCUUUCUUUUAGCUUCGAACCACUCUAUAUGUUACACGAGCUAUUAGGUUACUAUAUUUAUAACUCCCUCCAUCCCAAAUUAUAGGACACCCUCUUUUUAAGGAAAAUCAAACUCGGUAAACUUUUACUAAUAAUCAUAUUAACCUUAUCUAUGCUAAGUAUUAUGCAUGUUAUAUCAUUAGAUUCAUAUUUUAAAGUACUUUUAUGUGAUACUAAUUUCAUAUUCGUUGGAAAUAUAACAUGGAAUAAAUUAAAGGUCAAAAUAUGUCAUUGAAGACUAUGUAAAUAAAAUAUAAGCCUUAUAAUUUGGGACGGAGGACCAUUUAGCAUUCUAUACAGCUGUCUUUCUAGUGUGAUUUAAAUCUCCAAUGGUAAUAAACUAGUAAUAAUAAUGGUUCAUUAACCAAGUUUGCUGAACCAACAAUGAUAGGCAUUCAAUGAAGAUAUUACAAAUAUUUUCCUUUAAGUACAGCAUGAGAUCUCCUAUCAUUUCAAUAUUUUAUUGAAGAAGAUAAUAGUGAAUAAUUACUUUUAUGUAUGAAUCUUAGGAAAGCUACAGCCUUCUUAUGUGCACUACUAGUUGCGAACAGAAAAUAAAGUUAACCAGCCUAAUAAAAAUAUUUUAGCUAAUUACAAGUUUGCACUCCAUGAGCAGCCCGCCAGAGCUCCUGAAGAUUUCUAAUGCCUACCUCCAAGUUUCAGCUUCCUCCCUGGUGAUGGCUACCUCAAAUCACCUAGUCUCUUUUAUUCUGAAACACACUCUUGUCUCAUUCCAAUUAUAGUUUUGCCAUAUAAUUGGGAUAACUAACAUUCCCUCGUCUUAUUUCGGUCGUGCACUGUUGCUUCAUGAUAGUGAACGUUUGCCAGAUUUAUACCAUGUAAGUUGAUCCAUUGCUAGCUUCCAGAUAGUCCUUUCUAUUAAAGGUGCACUCGAUAUACAAUUGUCACGCUGUCUCUGGCAGAUUCCUACACAUUACAGUUGAACAUUACCAUUGGCAAUAUGCUAACAAUUAUUGAGAAAAUGAUAGGAAUUUGGCAGAAAAUACUACUACUAUGUGAUAUCUUUGGCAAGUACAAAUAUUUGAACUGGGUGGGCUUGAGUCAUGUUCGGAGCCUUACGUCUACUGUCUUGUUUUGUAAUAGAUUUUUUUUCCUAUUAAUUGCAGUGCACACAAUAGUUUGUCAUAAUCUACUUUAUUGAAACCUGAUUAUACAGUUUUAGAGUGACAGGAUCCUUUGGUCAUGCAUUACAUUAAAUUACGAGUGUUAAAGGAAAAUAAAUUUGGCAAACAGCAAAAAAGAAUAAUUCAUUUGCGUGUUUUGUGUUUGCAUGAGGAACAUGUUUUGAGCUGGUUAGUUUGCCCUCACUAGAAAAGCAGGUAAAUUACCUUGGAACUAAAAUAAUGGAAUGCAGGUCAAUACAACUUCUGGGAUAUGUUGCCUCAGAUUGUUGCAUUGCUCCUCUAGCUCUGGGCUGUACCCUUGCAGCUGCCGGUAGGACACCUCGAGCCUCUUGAGGGAACGAAGAGAACGCAAUGAUGAGGGGAGAGACUGCAACCUGUUGCACCCAUAAAAGAUGAGCUCUUGGAGUGAGUGAGGCUGAGAGGCGUUGGCAGAUUGGAGCAGCAAGAACGCCUGAGAUGCUGCCAAUGUCCAACUCCUCCAGCUCCUUAGAGCCAGCCACCACUGUUCGUGCCAUCCUUGUCAUCAGCCGAUCUUCUUCCAGGUCAUAAAUGUCGUAACCGUAAGCCCUCAACGCCUUGAGGUUGUUCAUCAGGGGAAGGUCGUCAUGAACAGCCUGCAUUGCUGCACAAGAGAGGACGCACCCUCCAAGUUGCAACCAAUGGAGGGACAUGAGCUUCUUGAGCACUUCAUCCUUCACAUUCAUGGUCAGGUGAUCCCUGGAGAAGAUACCUAAUCUGCUUAACGAGCUGGUAAACUGAGAUGGGAAUUGCAACAUGCCAUCAAUAUCAUUGUCAUCGUCGUCCAUUUCAUGGCUGCUCUGUUGCAUGCACAGUCCUGUUAUGCCCUUGCAGUCUUCCAUUUCCAAAUGGGAAAGACAAGGACAGCAAGCAAGAAUCUCCGAUAGCUCCUUCCCUGUGAUGUAGCAGUUCCUGAGCAUAAGAUGCUUGAUUGGUAUCUGGAUGGCAUCACUCUCUCCUCUUCCAGAUGAUAGGCUGAUGCAAUCCUCUAUAGCCAAUGUUUCAAGCGAGGUUAGCUUCUGCAGGGUAGCUAAUGGCACAGACGAGCAUACCUUGAUGGUCACACGAACUAACCAUUCCAUGUCAUGGAAUGCCAACACAUUGUCCAGGUUACCCAAGUUCAACAAAAUGUUGUCCACUCCUCUGAUUUCCAACAUGUGUAUAUCGUAAAGAAGUUUAUAUGGACGACUUGCCACUUUCGCCAACUCUAACUUAGUCGUAUAAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

97

LEP:

19.72%

ME_num:

323

MEP:

65.65%

HE_num:

71

HEP:

14.43%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.70

Avg Expression:

8.70

Tip: OSA-LNC112936641 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-1.102824241108582.56781242390815e-07
2Nipponbare // panicle // AM--/--Nipponbare // panicle // PM3.228384982727261.35925232031699e-13