Chr:
Chr10
Start:
8866682
End:
8869782
Strand:
+
Ref_name:
LOC112936620
Sequence
(XR_003238911.1):
AGACUAGUGUGCUGCUCGAUGAUGGAAUAAGCCUUGUGGUCUUUGGUCCUUGUGGUCCUUCUCUUGCUUUUAGGUUGUUUUUCCCCCUUUUAGGACAGCAUCCUUUCAGUUUUGCUUUUAGCAUCUUUCGGUUUUGCUUUUAGCAUCCCUAGGACAGCAUCUAGCAUCUCCUUUAUGCUUUAUUCAGUUUGGAUGCUCUCUAGGACAGCAUUGCGUCCAAAUUUUAGACUAGUGUGGGCAGCAAUUAGCUAGCAGCCAUCCAGCCAGCUAUGGCUAUAUAUAUGUAUCCAACCUCCCUCGGGAAGGUAUGGCUUUUGUGUUUUGUGAAUGAAGAAAACCAGAAAAUUGCCCCAUCUCGAGUGCCAUCCUCCUCUCAAUGAGAGUAACCAUUGAAAUUCUAACACUCGAGUCGACCACUGCGACUCCUUGCAGUGCCGUCCGUCUGUCGCCAAUACCUCCAUCGUCACGCUGCCUCCGUCCCUCGACGCCGCCCUCGCCGUCCUCCCCCAUGAGCUUCCUCCCUUCCCUCCGGCCUGUGCCCCCACGCCCACCACAAGCGCCGCCAUCGAUCCUCUGUCACUGCUGCCCCUGGAAAUCCACUUUCGUGCCCUGUCCGUUCCUGAUCCGCCACCAUCUAUCCUUCGUCAUCAAGGGCGUCAUCUCCCCUGAAUCAUCAAAGUUGUCGUACUCGUAUCCCCGAAACAAGCAGCCCCAGCGGCCCAGCCCCGUCCAUGCCGCCACCCCGGCCUUUGGCCUCUGACGCCGUCCAUGCCACCUCCCUGACAUCCUCGACGCUACCCUCACUGCUUCUGUCCCUCGAUACCGCCCUGAGUCGACCGCGAUCUAGACAGUGACGACGGAGGAACAGUCAUCCAGGAUUAUUGGGGGACAGGAACAUUCGGUUGUGGAACAAUUAUUGUGGAGGAGAAAGAUUUCAUUGCAGAGAAUGUCACGUUUGACAACUCAUCUCCCUAGGGGUAUGGGCAGAUAGAUGCAGUUUGAGUAACAACAGGUAGAAGUGCAUUCUACAAUUGCAGGUUCCUUGAUUGGCAGGUAUGCUCAUUUAUUCAACUCUUGGUUAAAUCAUUUCAUUAGUUAAGAUAAUCAUGGUUUAAAAGCGUCGCCUAGGAGACGCCUAGGCGUCUGAGCACCAUCAGGGGGCAGAGCGUCCCCACCGCUUACCCUUCUACACGUCUUGGAUCCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.5%
ME_num:
MEP:
26.02%
HE_num:
HEP:
17.28%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.90
Avg Expression:
13.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.07293286857805 | 0.00184396954484119 |
| 2 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.28573218348417 | 0.0185063488044369 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.2922856933355 | 0.0313026014411531 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.36388105902056 | 0.0145543656851215 |