Chr:
Chr10
Start:
21237087
End:
21238348
Strand:
+
Ref_name:
LOC112936614
Sequence
(XR_003238902.1):
AAGGAAUCACGUAGCAGAGAGCGAGUCCAUAUAAGAUGGUUGCAGGCGAGGUCUCCUCAUUCAGAUCACUCAUUCACACUAACCCUAGCUAGCAACCUGCAACCUGCAUAGUAUAUUGCAUUGCGCCCAAGCUUUCUUCUUCUUCUUCUUCUUCCCUCGCCGACAACCUCCUCCGUUUGCCCGGCCAUUGUUCUUCAGAGCUUGGUCGCGAUAGAAAGAAAUGAAAUUGUAGCUAUGAUGUUGGCCCGGCUCACUCAGAUGGAUCAUCGGUGCAGAAGAGUGCAUGAAUCUGAUGCAGUCUCAGUGUAGUAUGCUCCAUGCUGGAACUUCUGAUUGAGCCGUGCCAAUAUCUCAGCACCAUUUUUAUGCAAUCAUGCGUACAGAUCACUCCCAAAGUCUCAAUUUACCAUCACUAAUCUGCGGCUAUAUAUAUGGCGCUCGUCGGCUGGGGAACUGAUGAAGAAUUCUUCGAUCGGAUUUAAGGCGUCGCAGACUUGCAGUUACAUGCAUCUUCCUGACGUUUCCAUUCUGGGACAUGGAAAUCAUCGUAGGGAGCAGCAAGCAAAUAUAUAAAGCAGUUGAUUUGUGCAACAAACUGUAGUUAGUUGUGUUUAUCUGAAAUCUACAUAUUCAUAUGUUAUGUUUCAAAUUUUUUUGGUGAACAAAAUGUAAAUUUAUCGUUGUUUGUCCUCUCUAUGUAAUUUUCUACUCUUUCUGUUUUCAAAUGGAAAAUUAUUUUAUUUAUCCCUGUACAUGUACUCUGAUUUGUGUACUGGACUCCCUCUCCUUUUGAAUGGAACUAAAGGAUUUCAGGAGGGGAAACUCUCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
70.33%
ME_num:
MEP:
18.5%
HE_num:
HEP:
10.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.96
Avg Expression:
18.57
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 4.15776328233052 | 0.00013551674993111 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.29337374835823 | 2.64512679969689e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.6640639073562 | 1.60985390682424e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.08412701151045 | 0.00509908075642097 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 4.87580306461046 | 2.71572379983814e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.2698955723689 | 0.00493079236729372 |
| 7 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.13499119389804 | 5.44838537622547e-08 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.07424619875331 | 1.04881460452052e-07 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.85891195603241 | 0.000495798183624999 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.70134502283285 | 0.000297523002464401 |