Chr:
Chr9
Start:
19439477
End:
19441010
Strand:
-
Ref_name:
LOC112936447
Sequence
(XR_003238654.1):
UUCUCUCUUGCCUGCUGAGCGCGAGCGCGAGGCUGUACUGGACUGCAGGCGAGCAGAGGUGGGGGAAGACGUCGGCGCCGCGGGGGAAGCAACCGCUCCUGGAGCACCUCGAGGGAGGAGGGGAGCUCGACGGCCUCGAGCUCGCCGGCGGGGUCGGAGGAGAGCGGCGCCUCCGUACUCCGGCGGCGGCGCGGCCGCCUUCGAGGAGAGCGGCGCCUCCGUCGCCCCCAUCGCCGUUGACCUCGCCCCCAUCGUCAAGUCCCUCCGCGGCCUCGACGUCGACUGCCAGGACCUCCCCCGCGCCGGGCUGCGGGGCGUCGACGGGGCGAUGUGGAAGAGGAGGAGGACGGCGCCGCAGUUUUUCUCUUGCAAUCUUUUCUCUCAGUUUGAUGUCAUACGCAGUUGGCUCUACAUUUAGGGAUUCCUUUUUUGUAUGAAGUGAAACUAUCUGUUCCCCGUUUACCAGGUUCAUUCCGAGUGCUCUGAUCAUGAGGUUUCAGUUGAAACUACUAAGAGCCAGAAGCAUCAUCUCAAGAAGUUUGUUGCAGAUCAAGCAUAAUGAUGUGAUGGAGCCUGGCAUGAGAAUUCACCUUCCUGUGUCAGUGGCAGAGGGCGAGAUUAGAGAUGAGAUUGAGAAGGCCUGUCAUCCACAAGGAUUCUGCUAUACUUGUGCUUAACAAGCCCACGAAAGUGCCCAUGAAGGGAAAUUUGCCAGUACAUAACAGCAUGGAUGUGCUUGCAGCAGCAGCUCUGUUAUAUGGAAAUGAAGAAGGUUCAAAAUUGGUUCAUCGGCAGCGGGCGUCCCUCCUCCUCGCUACUGCUGAGCGGGGUAGAGACCGGCGCGGGGGUGGUGGCCGGGGACCUCGCCCUGCGAGUGACCCCCAUCCCGGCGCACAAGAUGGCUCCGCUCCAGGGCCUGCGCGGCGACCGUAACGGCGAGGAGGGCGACGACGGCUAGAGGAGAGAAAAGGAAGAAGGAGACCUGACCAGUGGGCCCAGCCUAUUUAUUAUUAUUAUUUUUGGAUGAAACUGCCACGUAAUCGCCACGUAGUAUGAACACCUAGUCAAAGGAGCCACGUAGGCGCCAAGUCAGCCAAAACCGGUAACAAUACCACCGAGGGAUCUAUUUUGCACCAGUUUUUGGGUUGAGGGAUGAUUUUGUAAUUCGGUGACAAGAUGGAGGACCUCCGGUGUACUUUUUUCCAAGAAAGACCAUAUGUCCUCAAAACCCUUAACAGGCCGGACAAACAGAAGGCCAAUCGAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.81%
ME_num:
MEP:
22.15%
HE_num:
HEP:
76.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.81
Avg Expression:
48.96
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.65117475401183 | 1.12843965954185e-10 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -1.57975736795077 | 8.70982343615821e-06 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.19934349467567 | 2.63972751480879e-06 |
| 4 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.09739500943743 | 0.00107720502151592 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.42787639573127 | 1.96378765518369e-08 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.45844585935904 | 6.70463491288259e-15 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.03018556643211 | 4.04510468140466e-06 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.03120884703894 | 2.72613941396938e-05 |
| 9 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.54853751298755 | 1.20055041334602e-10 |
| 10 | 9L136 // leaf // control--/--9L136 // leaf // salt | -1.22131986739858 | 1.33939048460206e-13 |