Chr:
Chr9
Start:
6375409
End:
6376111
Strand:
+
Ref_name:
LOC112936412
Sequence
(XR_003238530.1):
ACCAGAUGGGCAAUGGAAACAAGAUAACCAAAUCAGCCACCUUUGAUGAUAAUAUUUUUGCUUCUAGAAAUUGGAACAGUAUUCUGUAGCCCAGGUCCAUCUUAAGUCUUAAAGAGAGUAGUGACAAGCCAUUCAGAAUUAUGAAAAAAAAAACGACGCUUACUUCUAUUGAUCUGUUUUCAUCACCAAUUACAUCCAAAGCUUCCAGCAUGGUGCCCGUCGAUCCUCCGAUAAGAAGUACCGUUAAAACAACAAUAGCUGUGGUGGUUGUGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
87.2%
ME_num:
MEP:
12.2%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.94
Avg Expression:
1.69
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.85971873045326 | 0.040832983572338 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.29416014080517 | 0.0153762562631536 |