Chr:
Chr9
Start:
10621652
End:
10624771
Strand:
+
Ref_name:
LOC112936411
Sequence
(XR_003238528.1):
GACCAUCAGUUGAGCGACCAUGGGCAAUGGAGAAGAACUUGUUGCCAUGGAUGUGCUAGGAGGUUCCUCUCCGUUACUCGCAGCCAUCAUCACCAGUACUCACUACAGGUACAAGCAUGGCCUAGCGAGUGGUGGCGAUGGCGCAGCAACAUGACCAUUCAACCGGUGGCAGCGGCGGCGACCACUGGCGAGCACGUUGGAGGCGAGACGGCGACCGCGGGCUAGCGCGGCGGCGGCGACCGCAGGCCGACGCGCAGGAGGCGAGGCGGCGAAGACCUCUGGCCGGUGCGCAGGAGGCGAGACGGCGACGGCGGUCCAGCGCGGCGGCGGUGACCGCUGGCCGACGUGCAGGAGGCGAGGCGGCGACCGCGGGCCUGUGCGGCGGCAAGGAGUGCUGGCCGGUGCGCAGGAGGCGAGACGGCGACCGCGGGCCAGCGUGGCGGCAGCGACCACUGGCCGGCACGAAGGGAGGCGCGGCGGCGACCGCAGGCCAGUGUGGUCCGGCGCGAAGGGGAGCUCAGGGACGACCACAGGUGGUGCUGCUGGACUUUGUGAUGCUAGCUAACAUUGUGUUGAAAUUCAGUGAGAUCUCUUUUUUCAAAGUAUGUUGAAAUUUUGUGAAAUGAAAUCUUGUCUAAUCAUUGCUGAAAUCAUGUUGGAAUCCUGUUGAAAUUUUGUGAUAUUUGUUAAGCUAUUGCUGAAAUAUAGUCAAACUUUUUAUAAAUUCCAAGUAUAGCAAAGUUCACUUCGAAACAUUUGUAAAGUUCCGUUCAAAGCUGAACUCAAAACGGGUAAAUACACAAGUGAACACAUAUUU
Sequence
(XR_003238529.1):
CUUACAGCACGGUCUGUGGUGACCAUCAGUUGAGCGACCAUGGGCAAUGGAGAAGAACUUGUUGCCAUGGAUGUGCUAGGAGGUUCCUCUCCGUUACUCGCAGCCAUCAUCACCAGUACUCACUACAGGUACAAGCUGUGUAUUUCCCCAUCCAGCAUGGCCUAGCGAGUGGUGGCGAUGGCGCAGCAACAUGACCAUUCAACCGGUGGCAGCGGCGGCGACCACUGGCGAGCACGUUGGAGGCGAGACGGCGACCGCGGGCUAGCGCGGCGGCGGCGACCGCAGGCCGACGCGCAGGAGGCGAGGCGGCGAAGACCUCUGGCCGGUGCGCAGGAGGCGAGACGGCGACGGCGGUCCAGCGCGGCGGCGGUGACCGCUGGCCGACGUGCAGGAGGCGAGGCGGCGACCGCGGGCCUGUGCGGCGGCAAGGAGUGCUGGCCGGUGCGCAGGAGGCGAGACGGCGACCGCGGGCCAGCGUGGCGGCAGCGACCACUGGCCGGCACGAAGGGAGGCGCGGCGGCGACCGCAGGCCAGUGUGGUCCGGCGCGAAGGGGAGCUCAGGGACGACCACAGGUGGUGCUGCUGGACUUUGUGAUGCUAGCUAACAUUGUGUUGAAAUUCAGUGAGAUCUCUUUUUUCAAAGUAUGUUGAAAUUUUGUGAAAUGAAAUCUUGUCUAAUCAUUGCUGAAAUCAUGUUGGAAUCCUGUUGAAAUUUUGUGAUAUUUGUUAAGCUAUUGCUGAAAUAUAGUCAAACUUUUUAUAAAUUCCAAGUAUAGCAAAGUUCACUUCGAAACAUUUGUAAAGUUCCGUUCAAAGCUGAACUCAAAACGGGUAAAUACACAAGUGAACACAUAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.46%
ME_num:
MEP:
21.54%
HE_num:
HEP:
11.79%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.87
Avg Expression:
8.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.8062828525775 | 0.0425846089333565 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.3578157883522 | 1.30915039545682e-15 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | -2.66617420224911 | 0.002560584272038 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min" | 2.35852485444704 | 0.0117617736966016 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.6971240603655 | 0.0054207691829382 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -3.34065116406967 | 4.49768131089749e-05 |
| 7 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.16545802476138 | 1.35037389105373e-06 |