RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNC112936408

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

3480170

End:

3481016

Strand:

-

Ref_name:

LOC112936408

Sequence
(XR_003238519.1):

UGCUAGGAGGAUAUGCAUGCCCGGGAAUCCCUCACUUCACCAUCAGGACCUCCUUCGACAAAUAAUAGCAUUUGGACAAGGAAUGAGGUGUCUGAGCUUGGAAUUUGAUGGCUCGUGUUAAUGUAGUGGCUGCUAGGUGGAAUUUUUUGGUGCAAGAACUUGGCACUACCUAUAGGAACUUUGUAGUCGGCUGGGACUUGUGUAGUUGGAUGGUGGAUGGAUCAUUUUGUAAUCAUGUUUUGUGCUUUUGUAUGGAACAUGUUGCAAACUGAAUGCUGGAACUUGCUUUUGUAUGAGCUGGGAAAUUAAUUAUGGCUGGAAUGUGAUUAUAAUAUAAUUAUUCAAAUGGUUGUGGUUUA

Sequence
(XR_003238520.1):

GCUAGGAGGAUAUGCAUGCCCGGGAAUCCCUCACUUCACCAUCAGGACCUCCUUCGACAAAUAAUAGCAUUUGGACAAGGUCAGAUCAAUCCUCCCUAAGCUAGUUGUAUGCUCAGGAAUGAGGUGUCUGAGCUUGGAAUUUGAUGGCUCGUGUUAAUGUAGUGGCUGCUAGGUGGAAUUUUUUGGUGCAAGAACUUGGCACUACCUAUAGGAACUUUGUAGUCGGCUGGGACUUGUGUAGUUGGAUGGUGGAUGGAUCAUUUUGUAAUCAUGUUUUGUGCUUUUGUAUGGAACAUGUUGCAAACUGAAUGCUGGAACUUGCUUUUGUAUGAGCUGGGAAAUUAAUUAUGGCUGGAAUGUGAUUAUAAUAUAAUUAUUCAAAUGGUUGUGGUUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

289

LEP:

58.74%

ME_num:

137

MEP:

27.85%

HE_num:

65

HEP:

13.21%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.91

Avg Expression:

43.76

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h-9.138320473108713.63077302317653e-09
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA4.978638503484173.35445234046157e-05
3Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min"2.21644643389260.0408897094250618
4Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"3.058910268649790.0012720971359658
5WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h-8.898369029557770.0126950275778748