OSA-LNC112936400


Function Link


Basic Info

Chr:

Chr9

Start:

10689486

End:

10692073

Strand:

+

Ref_name:

LOC112936400

Sequence
(XR_003238505.1):

UCCAAUAGAUUUCAUCUCCCUUAACUCCACAAAUAAAUUCCUCCAAAUAUUUCCAUCCAAUUUCCCUUAGUUUACAUUUCCUUGAAUCCCAUUUAAAUUCCUUGUCCAAGUUCAAAAAGUCCACAAACAUUCAUUCUCUAAAUUUCAUCUCCUUUGAAUUCUAUUCAAAACCCUCCACACAAAUUAUCAAAGCUUCCUACUCAUUUUGGGCCGAGGUUCCUUCAUCUGGCCCAGUCAGCAUAAGUCUAUAUUUUCUCCCUCCUCCUUCCUGUGGGCAUGCUGCCGCCGCCGCCGCCGCCCAGCCAGUCCGACGCCGCCACCUUGCCGCGCUGCCCACGCCGUCGAUUGCCGCCACGCCACCACAACGCUGCUACACGUCGCCGCCACUGCCGAAACCGGGGGCCCUCGUGUCGCCUCCACAGCCACCGCCGCCAGCGCCAUUCCGCGGCCGCCGCUGCUCAGCCGCCAUCGCCUGCCGCUUUGCCGCCGUCGCCCGCCGAUUCGCCGCCGCCGCACGACGCCGUGCCGUGUCACCAGCCACGCGCUGCCGUAAGCCGACGCCGAUUACCGAGCCGCCCCUUUGCCGCAAAUCAGAAGCCGACGCCCGGCGCCGCCUCUCUCCAUCCCAUCCCCGACGCCGCCUCAUGCCGUCGUCGUCUUCCCUUUUGCAACCGACCUCGUCGCCUAUAAAAGCCGACGAGCACCCUCCUCUCCCCAUCUAAGCUCAAUGAGCUCCCUCUCUCUCUCUUUCUCCCCCUCUCUCCAAUCCUCCCGGCCACCGUCGCCUUUGCCCUCCACCGCCGACCGCAGUUCUACUCCUAGUGCCGUCUCCGGCCGUCAUCGCCGUCGAGCUCCGGCCACCCUUGCCGUGCCUCCCUUGCCGCGCUCUCCCUCCCUCUCCUCUGUGCCAGUCGAAGCAAGAAGGGGAGGUAGAAGAGGAGGUAAAUGGAGACACUGACAGUGGGCCCCACCUUUCAUAAAACUGUACAGCAAGUUUUAUCAGCAUCCAUGGAGCUGAUGUGGACCCAGAUGGCUACGCUGAAGCUGCAGGAAAUCUUAAGGCGCAAGGCAAGACAUAACUAAAAUUUUGAUCAUAUAGAAACCUUGAUAUAAUCUUCAUAUUUAAAUUUGAUGCAUGAUAUUUACUCUUUUAACAUAUCAUGGGUAGAUGUUAUACUUCAGAAUAACAUUAUGGUAAUUAUUAAUGCUUUCAAGCAUUAUUGCAUGAGACUAUAGAAAGAAGCAUUGGUUAUCAUUUUAUGUGAUUUACUAUUACAAACAAUUUUAUAAUCUAAGGAAUCUGGUUAAAAUGGGAAUUUAUGAGUAGAGAUUGUGAAUAUUGAGGAUUAUGAAUGUUGAUAUAUGAUGAAGUUUGUUUGUGUGGGGAGGUUGGAAAGUUUUAGGUGGUUUAACUGGAUAUAAUUACCCCCUUAUACCAUGGAAAUGACAUAAUUUGCGUCCAUCCACACGAUCAAGGAAUUGGACUUAGCCUAGUACAUUGUCCCACUAUAUGAAAGACUGUUGGUUGGCUCACUAGAAGCAGGAUUGGCGUGAAUGCAUGUGUAAGGAGGUUGGGGGCAUGGUUCACAACGGUAGAACCCAUGAAAGCAGCGACCAUGUAGCCUUGCCUAGGCCUGGCAAGUGUCCGACUGCUAGGACGGAUCAAUAUCCCACUCGUGCAGUAACUAGUAGUAAGUGGGACCUUCGAACAGCUCUGUUGUUCUCAGGCUAGCUAGCUGUGGGCAUCGUGUGGGUAAAGCUGAACAGUCUCUGCAGAGGUGAAUUAAAUCAUUCGAAUGUGCCGUACUCCCGGUUCUGGAGUUGUGUCAUCAGGGUGAUUCCUACUCCUGAAGUAUAAGUAGUUUUAAAAAUUAAAUGUUGAAGAUAAAGAUGACUUAUGAUUUUUUAUUACUUCUUUACUUUAUCAUUGUUUUAUCUAUUCAUAUCUAUUUACACUUAAUUAUUUAUAAUAUGUUUUGCUGAGUACAUAAGUACUCACCCUUGCAUAAUUUGACAUAUAGUAAAGCUAACACGAAGACUGGAAGGAAGCAAGAUCUACGGCAACAACAAGUUUGUCUAGGCUAGUCUACACUCGAGCUUUUGCCUGUGGAGUUCUUCGGAGUUUAUUGGUUGUAGUUUAAUAAUUUAGAGGUUUGGAUUUUUCUUGUAUUUUCAAAUAAGGAUAUUUUCGUUUGGAUCUUUUCACCCUUUAACAGUUGUAUAAUUAUUUUGUACUUCCUCUGUUUCACAAUGUAAGACUUCCUAGCAUUGCCCACAUUCAUUUAGAUGGUAAUGAAUCUAGAUAUAUGUAUGUGUUUAGAUCCAUUAACAUCUAUAUUUAUGUGGACAAUGCCAGAAAGUCUUACAUUGUGAAACGGAGGAAGUAUGAACAAAUAUGUGUAAAUAAUCGAAAGCUGUUCUGUAUAUCAAUUUGUGCGUGAUCGAAAUCCUGGACGAUCACGAGUGGAUUUUUGGG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

469

LEP:

95.33%

ME_num:

22

MEP:

4.47%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.93

Avg Expression:

1.23

Tip: OSA-LNC112936400 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.791664737548080.0274480756199396
2Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae1.5328447970210.0180337235353349
39L136 // leaf // control--/--9L136 // leaf // salt4.772506488936810.00839758322959572