RiceNCexp:Browse

OSA-LNC112936398

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr9

Start:

8377444

End:

8380423

Strand:

Ref_name:

LOC112936398

Sequence
(XR_003238503.1):

GUCUUCCUAUUACCAGGGAAAGAAGGGAGGAUAACAUCUAAAGCAUCUUCUGCACAGUUUAUUGGGUAGAUCUCUAUUUUGCACAUAUUCGUAUGGAGGCCACUGGCGUCAGCAAAGAAAAAUAAGAUUCGCCGCAAAGCCGAUAAUUCGUUUUUUUGUAGGUUUGGCGAAAAUGGCAACAUCAUCAGCAUAAAGUGAACAUUGGAAUCUUCUUUGUCUUUGGAAGAGAUUAGAUAAAAUGUUUGCUUCCUCUGCCUCCUUCAUGAUUUGUUGUAGGGGUUCCAUAGCUAAAAUGAAAAGCAUAGGUGAUAGAGGGUCACCCUGUCUUAGGCCCCGUGCAUGAUAAAUAUGGUCCCCUGGUGCACCAUUAAGUAAAAUCCUGGAGGAGGAUGUACCUAACAAGUUAGCAACCCAGUUGCGCCAUUUUUGACCAAAACCGAAAUUUUGGAGAGUCUCAAGAAGAUAUGCCCAGUUGACGGAGUCAAAAGCUUUAGAGAUGUCCACCUUGAUAAAGAGAGAAGACUUCUUUUGCCGAUGAAGCAGUUUCACCAUGUUUUGUACAUAAAGAAAGUUGUCAUGAAUCACCCUUUUCCGAAUGAAAGCACUUUGAUUUUGAGAGAUUAGGAGAUUGAGCUUCGGGGGGCCAAUCUAUUUGCCAGGAUUUUGGCUAGGAUCUUGGCAAAGCUGUGCAUAAGACUAAUCGGCCUAUACUCUCCAACUCUGGUCAACUUCAAUAAUCUCCGAUCCCACGCCCGCUUAAAAAAGGUUCCAAUGAAGCCAUCAGGCCCUGGAGCUUUCUCAAGGGCCAAAUUUGAAACCACUUCUUUGAUCUCCUCUUCAUCGAAAUCUGCAUCCAGGUCUGAGAGAUCAACCUCCGGUAAAUGCAGCCUCUCCCAGUUUAAACAUUUUGUUCUUGUCGAAGGGACUCCUAAUCUUUGAUUGAAAAAAGGUUGAAGUUCAGCCUUCUUUUGGUCACAUGUGAUUGCAGUGCCAGAUGGGGUUUCAAGACUGUGUAUGAAAUUCUUCCUCUUUCUCGAAUUUGUUUUCAUGUGAAAAAAUUUUGAGUUAACAUCUCCACAUUUUAGCCAAGUCAAUCUCGAGCGCUGGCGAAUUCUUAUCUUUUCAAGACUUGCUAGACCAAGGAUCUUUUCUUUUAGUUCCUUUCGCAGCCAAAGUUCAUCAUCAGAGAGGGAUCUUGUCUCCUGAGCCACAUCAAGCUGGAAAAUCACUUCGUUUGCAAUUGCUAGUCUCAGUCAGAAAUCACCAAUAUUUGUCUUGCUCCAUCUUCGAAUAUCUCGUGCUAGGCAGCAAAGUUUAAGAUGAAAUUUUGCAAAAGGAUUGGUUGAUCCAAUUGGUCUGUUCCAAGAAUUUGAUACAACCUCUAGAAAGUCUGGCAUUUUAAGCCAGUAAGCUUCAAAGAGGAAAUUUCUAUUAAUUUCUCUUUGCUCAGAGCCGACAAUGAAGAGGGCGGCAUGAUCAGAGCUUGAAGAGGAGAGUGCGGACAUAUAAGCAGAUCCAAAAAGAAUAUCCCAACUUGGGGUGAAGAAAGCUCGAUCGAUCUUGGUCUGUGUUGGGUUUGACCGAGCUUAGGCCCAAGUGAAACGCCUACCAGAGAGUGGCAACUCUUUAAUCCCAAGUCUAUCUAUCGUUCCCCUGAAGCUCUGCAUUAGUCUCAUGUUCAAGCGAUCAUUAUUUUUAUCGGAAGCCUUGUAAAUAAGGUUGAAAUCACCUAUUAUUAGCCAAGCUGGGUUCAUGCAGAGUUCUAGAUGCUGCAGCUCUUCUAGGAAAAGGACUUUCUGCUCUUCUGACUGUGGUCCAUAAACCACAGUGAUUGACCAUGCAAUGUUUUCAUCUUUCAUCGUGAUCGUGGCCGACAGACUGAAAUCUUUGAUCAAAACAUCUGAGAGUGUGAAGUGGCUAUUGUCACAAGCCAGUAAAAUACCUCCCCUAGUGCCGAUUGCUGGGAGAAAGGCAUAGUCAGAAACAAACCGGGAGCCCAAAGUCUGGAGCACCACAGGAUCUGAAAAGACUUCCAGUUUUGUUUCUUGAAGACAUACAAUUGUAGCUUUCAUUUCAUCGACUAGAAGUUUAACAUUAGCUUUCCUGCUUGGGUUGUUAAGCCCUCUUACAUUCCAGUUGAGAACAAAGCAGUUUUGCUGAGACAUAACAAAAGGCAUGCUGCGACUAACAGUUGAUUGAAACCUAGGGGGUUAUGACUUGAGGGAAGACACAGGCGAACAUCUCUGAAACACAGCCAAGACAGAUGGCAGAAACACGAAGAGAUGAUUAGGGCGCUGCAAGCUUCCAUCGAGGAUAAAUUGGGAACUACUUCAUUGCGGUCACUCCGGUGCCUCCUCCAGUACAUUGGCAAGGGCACGGGCAUCUUGACAUCAAAGUUGCUCUUCAGGCCGGUGCGACCGUGGAUGACUUCUUCCUCCCGCCAAGGCGGAUCGACUUGCAACCUCCCUUCUCCACCAAAGUUGGAAUGGUCUUCACAGCCACGGGGGAGAGAUUUAAUGCAGGCAUCAAGUUUUUUGUUAUCAUCAAGAACACCGAAAUUAUUUGCAAGAAUUUCUUGGGCAAUGGUCUCUAUCUCGAGUUUCGUCUUGCUUUGCUUGCUAAGCGCACACUGUGUCGCUGCGGAGAAAAAGUCACCUUGUUACGACAGGGGCGCCGAGUCAUGUCGCCUGGAGCUGGGAGCAUUGGCGUCGUCAGCUCUGCAAGGAAGGCUUCAACCGGCUGCUCCCUUGCCCUCUCCGGUGUCGCAAGCGUCGCCUGUCCUGCAGCAGAGAGCACAAAGACAGGGGAAACCGGCCUGGGUUUAAUAUACUUAAGAACUAGCAUUGUGGUCCGCGCAGAUUGCACGGCUAGCAUCAUUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

484

LEP:

98.37%

ME_num:

MEP:

1.42%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.97

Avg Expression:

0.75

Tip: OSA-LNC112936398 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	3.89987589439237	0.0439033337056162
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	5.31227228798486	0.00139313591982896
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	5.11694191517175	0.00138968163750984
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	4.56470875884438	0.00955031769436225
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	4.64558702976919	0.00328248710229841
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	3.93350957792275	0.0261478391025084
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	3.8195765699533	0.0286978752016395