Chr:
Chr9
Start:
16792698
End:
16794398
Strand:
-
Ref_name:
LOC112936386
Sequence
(XR_003238490.1):
GCCGCCUCCCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGUAUCACAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA
Sequence
(XR_003238491.1):
CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGUAUCACAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGGUGUGUCCCCGAAAAUCUUGCGAGGCGUUCGGGGAGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA
Sequence
(XR_003238492.1):
CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGUAUCACAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGGUGUGUCCCCGAAAAUCUUGCGAGGCGUUCGGGGAGGUGCUAGUUACAUCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA
Sequence
(XR_003238493.1):
CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGGUGUGUCCCCGAAAAUCUUGCGAGGCGUUCGGGGAGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA
Sequence
(XR_003238494.1):
CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA
Sequence
(XR_003238495.1):
CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.78%
ME_num:
MEP:
24.8%
HE_num:
HEP:
26.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.83
Avg Expression:
42.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift | 1.59081214107046 | 0.0223708733257657 |
2 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.53707283381643 | 0.00937674964623812 |