OSA-LNC112936386


Function Link


Basic Info

Chr:

Chr9

Start:

16792698

End:

16794398

Strand:

-

Ref_name:

LOC112936386

Sequence
(XR_003238490.1):

GCCGCCUCCCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGUAUCACAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA

Sequence
(XR_003238491.1):

CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGUAUCACAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGGUGUGUCCCCGAAAAUCUUGCGAGGCGUUCGGGGAGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA

Sequence
(XR_003238492.1):

CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGUAUCACAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGGUGUGUCCCCGAAAAUCUUGCGAGGCGUUCGGGGAGGUGCUAGUUACAUCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA

Sequence
(XR_003238493.1):

CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGGUGUGUCCCCGAAAAUCUUGCGAGGCGUUCGGGGAGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA

Sequence
(XR_003238494.1):

CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA

Sequence
(XR_003238495.1):

CCCCCCCCCCCUCGCGCCGCCGCCUCGCGCUACCACCGUCGGUCGCCGGCCCCCGCCACGACCCCUUCGUCAGCUACCGGAUCCGGCGCCGUCCGUCACCACCGCCGUCGAAGAAAGCCCGUAGGCCGCCUGUGUCCUCUUGCCGCCCGAUGUGACGAGGAGCUCGGCGGCGCCACACGGAGCUCAACCGAUCCGCAUCAUCCGCGCCGCUUAAAGUGAUUAUGAUUUGUGAAUCAACGGAUUUGAGAUUUGAACCUAGACAAGGAAGGGCUCUUGGAGCAACUGCUACAGUGAGCUGCUCUACUGGUUAGUUGGUCACUUGGCCGUCACUUGUCAGAACUCUCCUGAGCGCGGUGUCUUCCCGGCGACGACAGCGUGGGUGAUGACAUCUCUCCUGCUGCGGCCUCGGUGCCGGUGAAGUGACCGCGCGCGUUGAGGGUGUUGGUGGCGCCGGGCAGCAGUGCCCUUCCUGCGCGGUGGACAAGUGCAAGGAGGUGCUGAGCAGGUGCCACGACUAGCACCGGUGGCACAAGGUGUGUGAGGCGCUCUCCAAGCUGCCCGUCGUUGUCGCCGAUUGUGAGAUGCUCUUCUGCCAACAGUGCAUCAGGUAACCAAUAGUUUGUCCAGAUAGAAAACUAAAUCUUGGUAAUUGAUCUUCAAGCUAAGUAUGUUGGGGAUAAGGAGGAGCAGAGGUGGCCUAAAUCUGAUGGACUUUUUGGCAGUUUGGGAAGCAUUUGGGAUAUGGCAGGUAAUUUACACAAGCAUGAACCAUAAAAGGCAGGGUUUCUCCUACAUGAUUGCAUUAGCUCAAGUAUCAAAAGUAAUGGUGUAACUGCAAUCUAAGUCUUACUGAGGCAUAUAUGUGUGUUGCACUUAUCAAUUAACGUGUGACUGGGAGAGAUCAACUUUACUGCUUGUUGUUGCAUUUACAUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

240

LEP:

48.78%

ME_num:

122

MEP:

24.8%

HE_num:

129

HEP:

26.22%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.83

Avg Expression:

42.31

Tip: OSA-LNC112936386 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Taichung 65 // shoot_apical_meristem // 0_days_after_shift--/--Taichung 65 // shoot_apical_meristem // 12_days_after_shift1.590812141070460.0223708733257657
2Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day3.537072833816430.00937674964623812