Chr:
Chr9
Start:
16951392
End:
16952998
Strand:
+
Ref_name:
LOC112936381
Sequence
(XR_003238482.1):
AAUGCUAUCACCAGCUCCCCCCUCUGCACUCCACACAUGACUGAGUCUGAAGGUAUGAACAUACAAUGUCCUCCUCCCUCUCAUACGCUGUACCAGUACACCACAGGUCAUAAAAGUCCCAUUUGCAGCAGCCAUCAGAGCAGCUCGUGCCCAAUGGUAAUUGGUAAGCUAGCCCCUCAAUAAAUGGCAAUUCAGCUCGCGCGGCCCAUCCCAAGGAGCUGCGCCAACUGCCCUCCUCUCCCUCUUCAAAAACACCAGCGCUCUACUGCACUGAUGGCUCGAUCAGUAGCUACCUCUCUUGGCGUGUCUUCUUCUUCUUCUUCCUCUUCCCCACUGUCCAUGGUGGACUCCAUCUUGGCAUCUCUGAAUCAGUUUGAUUUUGAUAGGAGUUCUUGUUUUGGAGUGCAUGGCAUGUCCAGGCUGAAGUUAGGUUAAGGGGAUUGUUGUCUGGUUCAAGGUCUCCACAUUGUGCAAAAUGUUCAUUCAUGGAGGCACAGGAUGCUUGGUGAUCUCGGACCAGGCUUCAAUCCCUUUAACCAGCAUCUGCACAAUAUGUCUCUCAUCCGAGUGUGGUGCACUGCUGUAACUGGAGUAGCUCUUGCUUUGUUUUAUCAGCAUAUGAACAAGCAAAGUUUAACAAAGAUCUAGGUUUGCUCAUCAAGAAUCCAAGGUUUUGGUUCUAUCUAGAAGGAAACCCUGGAUAGCUAAGGACCAGUUACUCUAUAUAGUGUAUAUGUGUUUUUGUAGACAGUGAGCAGUGUAUAUGUGUGUCAGGCAUGCUGCUCAUGCGGGGAAACGCAUGCUGCGAGCUUCUCAUUUUCUCAGUUCUCACUGACUCUGAAUCAACUGCUACCCUGCAGUUUUAUGCACCUCAACACCUUGCAUUUCUGCAUUGGCAUCAAAUCUCGAUCUCAUCAAGUUCUUAACUAUGUUUACAUGAAAAUGAUAUCACACCCAUGCAUUGCACGGAUUUAAUUGCUGCAGGUGUUCUUCUCUGAAAACUUAUAUCAACAGCCAUGCAUGCAGAUCUUGGAGAUGAAAUUCAGAAACUGUACGUGCAUGCAUAUUGUGAUUUGUGAAGCACUGCAUCGUGGUACUAUGCUAGUACUGUACGUAGCAAUAAUGCUAGUAUUCACUGGGUUCAGGGUGGUAGUAAACGUGAGCACUGUCACUCUGACAGUCAGAACAAGGGGAGGACCGGAGGACAUGAACGUAACUGCCGACGCAUUUAAGCAGGGACACGGCUAUAGCUAGCCUCAUUACUUCGCUCACGCAGCAGCUGUGAAUUGAUCGACGAUGCCAUUUACACGGCGAAAAACUACUACCACAAGUUGCACCACUUCAAGGCGCCAGAUCGUUUUCUCUCUGGGAUUUAUGUUCCAUGUGUGUUCUUCUGCAGACUGCAGUUUACUAGUGCGCUGCAUACUGACAUUGCAUUUUCAGAAAAAUCUUCAGAUAUGUAAUUGCAGCAGUACUACUAAUCAUAUGUUGUCUUGAUCGAGUACAAUGAUGAACAUUGGUACGUCAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
66.06%
ME_num:
MEP:
28.86%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.86
Avg Expression:
7.91
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.32571382659904 | 2.572084278309e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 5.02431597084097 | 1.10251155339101e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 7.069666574433 | 8.6143739126992e-26 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.09966421736998 | 0.000144984153365294 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.91181924043352 | 1.02608827097311e-16 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 4.14008072114447 | 6.8887961069071e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.15600634241992 | 0.00028737657297678 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 6.01948441462827 | 6.78907699112422e-18 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.48404592972854 | 8.24504232915896e-09 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.35190227792166 | 4.44649762885532e-09 |