Chr:
Chr9
Start:
14348818
End:
14349706
Strand:
+
Ref_name:
LOC112936372
Sequence
(XR_003238467.1):
UGAAAUCGCGAUUCCCCUUUGUGUCGUCUUCUCCUUGUCAGUUGUCACGCUCGCGCCGCAUCCGCUCCCGAAGCCGAAUCGCCCUCGCGCCUCAUCUCCUCGUCGUCACCGCCGCCGCCGCCUGCCCACUGCCACCUCUUCCCCGCCGUGCCGUCGCCUGCUCUCCACUAUCACCUCUUCCUAGACCCCGCCACUGGCGCCGCUUCCUCCUCCUCGUCCCUGCCCUCCACCUCCAGCCCCCCGCCACCGCCUCUUCCUCCUAGUCCCCACCGGUACCGUCGCGCCGCCUGCACCUCCUCGUCCCUUUCCUCCACCCCUAGCCCCACGUUGCCGCCGCUUCCUCCUCCUACUCCUCUCCUCGUCUCCCUUCAGAAAGCCAGCUUCAAAGCUCCAAGAAAGCCAGCUUCAAAGCUCUAUGGCACAUCCCAGAGCAAUGGCAGCAUGGAUGCAGGUGAGGACACCCAGCCGUCCGAGCCGACCGUGGUAAAGCUUUCAUCAAGGUGCUCGAGGCCGACUCCAUUGUUGAUUUGAAUUAUGGAACCAUAAUGGUCAGUUACUUAGUUGUUUGAAUUUAAUAUCCAGAAACAUCCACUGUUAUGUUGUAAAACCUCCUGGCUUUCAAUGGGCAAAACCUAAUAGAAGACUUAUUCAGUUUGGCCUUGGUGAAAUCUGUAACCUGGAAACAUAUUGUUUUGUUUUCAUAUAUGCAGAUCCAACAAAUGCUUUGGUUAUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
28.25%
ME_num:
MEP:
45.53%
HE_num:
HEP:
26.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.74
Avg Expression:
10.38
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.57368523218464 | 0.0122748054846856 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.24796042853396 | 0.00817572262863044 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.25091774199708 | 0.00257616849424795 |
| 4 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.47972773681044 | 1.69966371355726e-05 |