Chr:
Chr1
Start:
28183111
End:
28186675
Strand:
-
Ref_name:
LOC112936304
Sequence
(XR_003238415.1):
GUUCUCCUGCUGGGACAGGGGCCAACGCGGCCGGUUGGCACAUAGGAGUGAGGAGCUGCCCCGCCGCCGGCGACCACGGCCCGCCCCGCCCCCAGCUCCCCUGCGCCGCCACCUCGGCGCCACCAGCUCCUCUGCCGCAGGACAUAGAUGCCUUUCUUCCACCCGUGCUCGCGGAGGUGGCUCGGCAUUGGCCUUGCGGAUGGGAGCAGUUGUCCUAGUGGCGCAGCUCGCGGCGGAGGGCUGGGGUCGUCGAGGGCGAGCGAUGCAGAGGUGGACAGCGAUGAUGGCGGCUUUGGCUCGGCCGGAAAGAGCGAACAAGAGAGAUAGCUAUGUAUAAGUGGAAGCAAUUCAUCAUAGAAACAAGAUGGUACAAGUUAGACAAAUAUGUGCCUUGCAUUUCUACAUCAACAAAAAGGCCCUUGAAGUGAUGCAAUCCUCUGAAUUCAAGGGGGGAAAGGGUAAUUGCUGCAAAGGCAUCUAAAUAACCACCUUAGCAUUUAGCCAUCUGUACUGCAGGUAAUGCUCAUCUAGCAUAACUGCUGUAAUGCUACCGCUAUUACUAUGUACUGUCUAUUCUGCCACCAUGCAUGUGUCAAAUUUUGCUAGAUAAAUCCUGUCCACAAUCUGCAUAUAUCUAAUGAUUAGCUUUUAGCCUCUAUGUCAACCAGCGAUAUACACGCUCAAAUCAACAUGUUAAUUAUAAGGCGACUGGUAGGGCACGCAAAGCAUGCCGCGCAUCCUUGUUUGAUUCACGUAAUGAAUGAAUGAUGAGGUUUAGUGUUUUGUCCCCUGAAUUAGUUGGACUGUUGGUGUGUUUUGGUAUAUUUUGUGUGAGGUCCUGAUUUUGUUGUCUCUUUUCCUUAUUAGCUCUUAAGCAUAAUGUUUAGAGAGAUGCAGGUUAUGGUGAAUGGUUUUUUUUUUCUUCCAAGGCUAGUAAAAUUUGGAGUCGUCCAGUUGUGCAGCUGCUCACCAUGGAAAAGCUACCAUAUUAUUGGUUACCUCAAUUUGGUCUAUGUCCAGUUUCAACCAAGGUUGUAUUCUAAACUGUUCAGAAUCAUGAGGCUGAGGUCAAUCCAUGCUAUAAUCUAUAGAAAAUUUCUAAACUAAACUUUGUUGCAGGGUGUUUGAUUCUUUCUUUUAUCUAAUAUGUUUAGAACUCAUUCCAUGAUAUAGUUUGUAUAAAAUUCAGGACUAAAGCUUACUGUCAGGAUUUUGAGAUGGUACCUAAUCACCACAGUUCGCGUUUUUUUUUUUCCAAUCCGAUGAUUUGCCCAGUUUGGAAUUUGUUGCAGUUUAGCAAACUGAGUAGUUUCUGGAAGUCAUGUUUCAAUCUGUUUGAGGUUACAGUUUCAACUUUGAAGUGGUGUGACGUCAUCAUCCUUGCCUUGGAGUUGCUGUUUCAAAUUUGUGUGCCAUUUGAGUUGAUAAAUUAGAAAGACAUUGUGAUAUUUGAACUGCAUGCUUAGACUAUUAGUUGCUGAAGUGGCUACUGAAGCACUUUUUGCAGAUUUAGAAAAAAUGGGUACCAAAAAGUUGUUGAUCUGCAUAGUAUGUGCAAUAAAUUCCAGCAGGAUUUCGAACAUUGGUUGGUUAGUUCAGAUUAUUGAGAUAACAUUUUCGCCAACUAAAAGCUUUCACUUGAAAACUUCAUGGAGCAUAUUCCCCAUUCUUGAGACACAACUUUGUCCAAGAACUAAAUAUGCCUAGGGAAGGGGUUAAGGAUCAAAAUUCAUGUUCCCAUUUCAUUCUUACUAUUGAUAUUUUACUUCAAAUUGCUAUGCCAAGUUGCCAACAUCAGAAUACAUCAGCAAAUUAUGGAGCAAAAUAGAUACAUUUGUGUUGAUUAUUUUUUUUUUGGACUUUUGAUGCCCCUUAGGAAUUAGGGGAAUUAUGUGUAGCAUGUGGACAAGUUUAUUUUCUUGCCAACUACAUCAAGAUUCUUCUGUUCAUUAAUAUAUAGAGACUUCCUCUAAAACAUUAUGUAUUGCAUUGGAGCUGGAUAUUGCAAUAUGUAAUUAUGUAGAUAGUGGGACUAUGGAAUUUUAAUCGCGUUGGUUCUUCCAUGUUAAUUUCGAUGUAAUUACUCCGUUCUUUUCUUUUGCAAGACUGACGCCUUGUCGUUUGUUUGCAAUAUUGCAUUUCUUGUCAAAACUUGGAUUUACUGCCAUGUUAAUAUUAAAAGGUUAGGACUCACUGUGGCAUGCCAGAAUGCAUACUUACUAGAAAGCAAAUAACUGCUUAUGCUAUAUUUUGCUGGUUUACAAUGCAGUGCAGAGGCCUACGGAGCAAAUAGCUGAUGCGGAAGCCCUGUUGGACAUUGCAAAAAACUUUGGUAACAUCUGUGAGGUCUCAGUCAAGUGAAGGAAUCACUCCCUCUGAUUUCGUAACAGCAACGCUGAAGAAAUUUGGGGCAAUCAGGGGGCCUUGAAUCUGAGGCUGCUUCAUUGCGCUGGGGCGAUGUUGGGCUUUCUGUGCCCCAUGUCUUCAGGGCUUCACCUGGAUGCUGCACUAUAUUUGGACCCAUGAAUACAGAAGUAAAGCAGCGGAAGACUGCGGUUGUCAAUACAAAAUGAACCGCGAGGCCAACCGAAAAUAUUCGUCCUGAACAGGUAGCCAACUAGGCAAGUAACCAUAUGCUUUUGUAAUAGAGGAUAUAAUAGACAGCAAUGAAACCAUAAUAGCCACCUGUGCAUUUCUUUCAUCGUGGUAUUCAUUUCUCCCUCCAAAUUAAUCUACCAUGAGUCUGUGAGGUAGAUAGCAGGUCCGGUGCUAUUAUUCAAUGCCAUUGACUGGAAACUCAACAUAUACCUUACUAGAUUCCAUUUUGUAACUGUGUUGCUUACAUGUUCUGAACCAUAGAACCUUUCCUUUUUUUUUCUUUAUUAAAGGAACAUCUGGGACAGUACCAUUUAUAUUCCUUGUCCACUAUCAAGUU
Sequence
(XR_003238416.1):
GUUCUCCUGCUGGGACAGGGGCCAACGCGGCCGGUUGGCACAUAGGAGUGAGGAGCUGCCCCGCCGCCGGCGACCACGGCCCGCCCCGCCCCCAGCUCCCCUGCGCCGCCACCUCGGCGCCACCAGCUCCUCUGCCGCAGGACAUAGAUGCCUUUCUUCCACCCGUGCUCGCGGAGGUGGCUCGGCAUUGGCCUUGCGGAUGGGAGCAGUUGUCCUAGUGGCGCAGCUCGCGGCGGAGGGCUGGGGUCGUCGAGGGCGAGCGAUGCAGAGGUGGACAGCGAUGAUGGCGGCUUUGGCUCGGCCGGAAAGAGCGAACAAGAGAGAUAGCUAUGUAUAAGUGGAAGCAAUUCAUCAUAGAAACAAGAUGGUACAAGUUAGACAAAUAUGUGCCUUGCAUUUCUACAUCAACAAAAAGGCCCUUGAAGUGAUGCAAUCCUCUGAAUUCAAGGGGGGAAAGGGUAAUUGCUGCAAAGGCAUCUAAAUAACCACCUUAGCAUUUAGCCAUCUGUACUGCAGGUAAUGCUCAUCUAGCAUAACUGCUGUAAUGCUACCGCUAUUACUAUGUACUGUCUAUUCUGCCACCAUGCAUGUGUCAAAUUUUGCUAGAUAAAUCCUGUCCACAAUCUGCAUAUAUCUAAUGAUUAGCUUUUAGCCUCUAUGUCAACCAGCGAUAUACACGCUCAAAUCAACAUGUUAAUUAUAAGGCGACUGGUAGGGCACGCAAAGCAUGCCGCGCAUCCUUGUUUGAUUCACGUAAUGAAUGAAUGAUGAGGUUUAGUGUUUUGUCCCCUGAAUUAGUUGGACUGUUGGUGUGUUUUGGUAUAUUUUGUGUGAGGUCCUGAUUUUGUUGUCUCUUUUCCUUAUUAGCUCUUAAGCAUAAUGUUUAGAGAGAUGCAGGUUAUGGUGAAUGGUUUUUUUUUUCUUCCAAGGCUAGUAAAAUUUGGAGUCGUCCAGUUGUGCAGCUGCUCACCAUGGAAAAGCUACCAUAUUAUUGGUUACCUCAAUUUGGUCUAUGUCCAGUUUCAACCAAGUGCAGAGGCCUACGGAGCAAAUAGCUGAUGCGGAAGCCCUGUUGGACAUUGCAAAAAACUUUGGUAACAUCUGUGAGGUCUCAGUCAAGUGAAGGAAUCACUCCCUCUGAUUUCGUAACAGCAACGCUGAAGAAAUUUGGGGCAAUCAGGGGGCCUUGAAUCUGAGGCUGCUUCAUUGCGCUGGGGCGAUGUUGGGCUUUCUGUGCCCCAUGUCUUCAGGGCUUCACCUGGAUGCUGCACUAUAUUUGGACCCAUGAAUACAGAAGUAAAGCAGCGGAAGACUGCGGUUGUCAAUACAAAAUGAACCGCGAGGCCAACCGAAAAUAUUCGUCCUGAACAGGUAGCCAACUAGGCAAGUAACCAUAUGCUUUUGUAAUAGAGGAUAUAAUAGACAGCAAUGAAACCAUAAUAGCCACCUGUGCAUUUCUUUCAUCGUGGUAUUCAUUUCUCCCUCCAAAUUAAUCUACCAUGAGUCUGUGAGGUAGAUAGCAGGUCCGGUGCUAUUAUUCAAUGCCAUUGACUGGAAACUCAACAUAUACCUUACUAGAUUCCAUUUUGUAACUGUGUUGCUUACAUGUUCUGAACCAUAGAACCUUUCCUUUUUUUUUCUUUAUUAAAGGAACAUCUGGGACAGUACCAUUUAUAUUCCUUGUCCACUAUCAAGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
53.46%
ME_num:
MEP:
42.28%
HE_num:
HEP:
4.07%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.92
Avg Expression:
8.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.98689708475793 | 1.41299582461325e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.18631180991796 | 0.00055858194653945 |
| 3 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.15646129598871 | 0.0261480247762036 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.18083310751376 | 0.00670989296050216 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.71479686791838 | 5.66475977537164e-06 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.15433749630918 | 0.000289933122313752 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.06207527640982 | 0.000771053437583452 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.43250150340452 | 9.16760344013209e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.50308325461928 | 2.5597078860343e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.10573313158452 | 6.81206264763032e-11 |